# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ou6A 190 2.96e-15 3cexA 172 3.21e-14 2qe9A 178 3.75e-14 1rxqA 178 5.65e-14 a.213.1.1 105118 2hkvA 149 2.15e-11 2p1aA 154 4.44e-10 2f22A 144 1.42e-08 a.213.1.2 132795 2nsfA 261 1.86e-06 2yqyA 169 5.21e-06 2qnlA 162 2.00e-05 2qgsA 225 1.280 1o08A 221 1.795 c.108.1.6 86525 1lm5A 214 3.830 d.211.2.1 74029 1i6pA 220 5.583 c.53.2.1 61848 2ebdA 309 5.744 1nm2A 317 6.918 c.19.1.1,d.58.23.1 80654,80655 2q1zA 184 7.875 2dy1A 665 8.324 2v8tA 302 8.603 2yxhA 116 8.840 1h3fA 432 10.24 c.26.1.1,d.66.1.4 76631,76632 2cwlA 302 11.37 a.25.1.3 130927 2gicA 422 11.49 a.260.1.1 135227 1r4uA 301 12.40 d.96.1.4,d.96.1.4 97047,97048 1m15A 357 12.85 a.83.1.1,d.128.1.2 78368,78369 2qacA 146 13.40 2oblA 347 13.84 1wdkC 390 14.02 c.95.1.1,c.95.1.1 109258,109259 2bl0B 145 14.71 2ibaA 302 15.40 d.96.1.4,d.96.1.4 137178,137179 1vq0A 302 16.44 d.193.1.1,g.81.1.1 114000,114001 2qvjA 421 16.52 1yioA 208 18.26 a.4.6.2,c.23.1.1 123326,123327 3craA 265 19.40 1m3kA 392 20.70 c.95.1.1,c.95.1.1 78565,78566 1u0fA 564 25.18 c.80.1.2 112912 2v6gA 364 27.33 2e52A 300 27.57 1nu5A 370 28.49 c.1.11.2,d.54.1.1 92183,92184 1wrrA 301 29.06 d.96.1.4,d.96.1.4 121204,121205 2debA 653 29.65 1rtrA 301 31.10 a.128.1.1 97820 2aaoA 166 31.16 3cawA 330 31.59 1io7A 368 33.25 a.104.1.1 18971 2c1vA 338 34.15 1ni3A 392 34.52 c.37.1.8,d.15.10.2 80531,80532 2iqcA 210 35.50 3broA 141 36.56 1tn6B 437 37.35 a.102.4.3 112528 1y1xA 191 37.41 a.39.1.8 116374 1hnjA 317 37.47 c.95.1.2,c.95.1.2 35969,35970 1pswA 348 37.54 c.87.1.7 88287 2ejqA 130 37.54 1jjvA 206 39.20 c.37.1.1 71698 1topA 162 40.04 a.39.1.5 17223 2gv5A 161 40.41 1zd9A 188 40.88 c.37.1.8 124938 1jftA 340 41.09 a.35.1.5,c.93.1.1 66652,66653 2ib8A 395 41.11 1tzzA 392 41.98 c.1.11.2,d.54.1.1 112896,112897 2cxnA 557 42.49 2h27A 73 44.45 a.4.13.2 135993 3bbyA 215 45.95 2bsqA 146 48.17 c.120.1.1 129098 1tyhA 248 48.52 a.132.1.3 107458 2gt1A 326 48.58 1ayl 541 48.72 2hivA 621 49.33 2c82A 413 49.40 3brqA 296 50.03 1xl7A 612 50.06 c.43.1.3,c.43.1.3 115438,115439 1dceB 331 50.38 a.102.4.3 18872 2pkeA 251 50.39 1d3gA 367 51.64 c.1.4.1 28600 2dznA 228 53.31 2ef5A 290 53.82 1ua4A 455 54.73 c.72.1.3 99128 1zceA 155 54.74 b.122.1.8 124907 1jbeA 128 54.78 c.23.1.1 62845 1t64A 377 55.72 c.42.1.2 106543 1zowA 313 56.90 1hqvA 191 57.62 a.39.1.8 61160 1wdcC 156 58.32 a.39.1.5 17317 1u2xA 474 58.50 c.72.1.3 107622 2zfdA 226 59.52 1rhs 296 60.54 2p06A 114 60.61 a.204.1.3 139452 2pibA 216 61.08 2bl0C 142 62.33 2arhA 203 63.69 d.108.1.9 127197 1uhnA 189 64.05 a.39.1.5 99399 2pbkA 228 64.77 2h1cA 139 65.09 c.120.1.1 135944 2h4tA 626 65.70 1m4tA 392 66.96 c.95.1.1,c.95.1.1 78617,78618 2v5xA 388 67.43 2qptA 550 67.45 2os5A 119 68.30 2dkzA 84 68.57 2yzsA 315 70.31 1qq5A 253 70.90 c.108.1.1 43327 2o5gA 148 71.44 1uohA 226 72.77 d.211.1.1 99690 1iqqA 200 72.83 d.124.1.1 66274 1afwA 393 73.06 c.95.1.1,c.95.1.1 35900,35901 2hpsA 186 73.37 2jnsA 90 74.02 2qklB 95 74.43 1omrA 201 74.60 a.39.1.5 93349 2scpA 174 75.68 a.39.1.5 17256 2f3yA 148 75.86 2pgeA 377 76.32 2cmwA 310 76.76 1adt 356 78.28 1qyiA 384 78.42 c.108.1.13 96595 1adtA 356 79.24 a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 2b0jA 358 81.12 a.100.1.11,c.2.1.6 127639,127640 2iorA 235 81.70 1rvkA 382 82.39 c.1.11.2,d.54.1.1 97928,97929 1wdcB 156 82.90 a.39.1.5 17302 1lv2A 229 84.20 a.123.1.1 78230 1pyfA 312 84.33 c.1.7.1 95334 1b79A 119 85.20 a.81.1.1 18451 1ggzA 148 85.69 a.39.1.5 70176 1bedA 181 85.96 c.47.1.13 90330 1kyfA 247 87.28 b.1.10.1,d.105.1.1 73220,73221 1beaA 127 87.37 a.52.1.2 17826 2ptmA 198 88.01 2oztA 332 88.66 1l9xA 315 89.00 c.23.16.1 73762 1uptA 171 89.27 c.37.1.8 99767