# TARGET T0481 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0481.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 839 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.021 0.684 0.001 0.012 0.023 0.001 0.001 0.007 0.191 0.032 0.009 0.020 2 C 0.001 0.010 0.818 0.001 0.012 0.039 0.001 0.001 0.004 0.085 0.012 0.007 0.012 3 Q 0.001 0.009 0.257 0.001 0.067 0.557 0.001 0.001 0.003 0.050 0.042 0.003 0.011 4 S 0.001 0.002 0.029 0.001 0.042 0.889 0.001 0.001 0.001 0.010 0.023 0.001 0.003 5 N 0.001 0.001 0.005 0.001 0.010 0.972 0.001 0.001 0.001 0.004 0.007 0.001 0.001 6 Q 0.001 0.001 0.003 0.001 0.007 0.984 0.001 0.001 0.001 0.002 0.003 0.001 0.001 7 I 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 8 V 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 9 S 0.001 0.001 0.001 0.001 0.004 0.990 0.001 0.001 0.001 0.001 0.005 0.001 0.001 10 H 0.001 0.001 0.001 0.001 0.003 0.984 0.001 0.001 0.001 0.001 0.012 0.001 0.001 11 F 0.001 0.001 0.001 0.001 0.003 0.977 0.001 0.001 0.001 0.001 0.017 0.001 0.001 12 L 0.001 0.001 0.002 0.001 0.006 0.938 0.001 0.001 0.001 0.003 0.050 0.001 0.001 13 S 0.001 0.001 0.005 0.001 0.011 0.881 0.001 0.001 0.001 0.004 0.099 0.001 0.001 14 H 0.001 0.001 0.015 0.001 0.010 0.923 0.001 0.001 0.001 0.012 0.039 0.001 0.001 15 R 0.001 0.001 0.011 0.001 0.008 0.949 0.001 0.001 0.001 0.008 0.024 0.001 0.001 16 N 0.001 0.001 0.006 0.001 0.010 0.947 0.001 0.001 0.001 0.007 0.029 0.001 0.001 17 V 0.001 0.001 0.012 0.001 0.012 0.942 0.001 0.001 0.001 0.009 0.024 0.001 0.001 18 T 0.001 0.001 0.005 0.001 0.004 0.976 0.001 0.001 0.001 0.002 0.012 0.001 0.001 19 N 0.001 0.001 0.001 0.001 0.008 0.984 0.001 0.001 0.001 0.001 0.005 0.001 0.001 20 E 0.001 0.001 0.001 0.001 0.014 0.969 0.001 0.001 0.001 0.001 0.016 0.001 0.001 21 L 0.001 0.001 0.001 0.001 0.018 0.975 0.001 0.001 0.001 0.001 0.006 0.001 0.001 22 A 0.001 0.001 0.002 0.001 0.132 0.830 0.001 0.001 0.001 0.001 0.034 0.001 0.001 23 E 0.001 0.001 0.003 0.001 0.122 0.537 0.001 0.001 0.001 0.003 0.332 0.001 0.001 24 K 0.001 0.007 0.067 0.001 0.032 0.296 0.001 0.001 0.004 0.032 0.557 0.001 0.004 25 I 0.001 0.043 0.578 0.001 0.003 0.087 0.001 0.001 0.003 0.252 0.026 0.005 0.002 26 S 0.001 0.001 0.919 0.001 0.001 0.003 0.001 0.001 0.001 0.069 0.002 0.001 0.003 27 K 0.001 0.001 0.030 0.001 0.299 0.454 0.001 0.001 0.001 0.007 0.209 0.001 0.001 28 D 0.001 0.001 0.018 0.001 0.734 0.209 0.001 0.001 0.001 0.012 0.025 0.001 0.001 29 H 0.001 0.001 0.010 0.001 0.870 0.108 0.001 0.001 0.001 0.003 0.004 0.001 0.002 30 Y 0.001 0.018 0.118 0.003 0.226 0.303 0.001 0.002 0.070 0.038 0.196 0.007 0.017 31 S 0.005 0.033 0.284 0.004 0.078 0.098 0.002 0.001 0.022 0.110 0.272 0.069 0.022 32 Y 0.006 0.044 0.478 0.003 0.018 0.037 0.001 0.001 0.014 0.167 0.160 0.020 0.050 33 K 0.001 0.013 0.747 0.002 0.003 0.005 0.001 0.001 0.005 0.151 0.013 0.039 0.020 34 P 0.001 0.027 0.690 0.002 0.023 0.015 0.001 0.001 0.008 0.114 0.064 0.006 0.048 35 A 0.001 0.013 0.611 0.005 0.065 0.026 0.001 0.001 0.010 0.135 0.105 0.020 0.010 36 E 0.001 0.011 0.246 0.002 0.143 0.047 0.001 0.001 0.004 0.180 0.353 0.003 0.009 37 T 0.001 0.018 0.283 0.001 0.062 0.058 0.001 0.001 0.004 0.285 0.280 0.005 0.005 38 S 0.001 0.020 0.353 0.001 0.025 0.192 0.001 0.001 0.003 0.261 0.134 0.002 0.008 39 M 0.001 0.035 0.194 0.001 0.017 0.442 0.001 0.001 0.003 0.233 0.063 0.007 0.004 40 S 0.001 0.016 0.294 0.001 0.017 0.560 0.001 0.001 0.003 0.062 0.015 0.004 0.027 41 A 0.001 0.001 0.005 0.001 0.004 0.984 0.001 0.001 0.001 0.001 0.005 0.001 0.001 42 E 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 E 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 45 V 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 46 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 47 H 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 48 I 0.001 0.001 0.001 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.014 0.001 0.001 49 L 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 50 T 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 51 S 0.001 0.001 0.002 0.001 0.002 0.981 0.001 0.001 0.001 0.002 0.013 0.001 0.001 52 F 0.001 0.001 0.004 0.001 0.002 0.983 0.001 0.001 0.001 0.002 0.008 0.001 0.001 53 H 0.001 0.001 0.003 0.001 0.004 0.982 0.001 0.001 0.001 0.002 0.008 0.001 0.001 54 L 0.001 0.001 0.001 0.001 0.005 0.982 0.001 0.001 0.001 0.001 0.009 0.001 0.001 55 F 0.001 0.001 0.002 0.001 0.005 0.973 0.001 0.001 0.001 0.001 0.015 0.001 0.003 56 A 0.002 0.001 0.003 0.001 0.011 0.954 0.001 0.001 0.001 0.002 0.020 0.002 0.004 57 N 0.003 0.001 0.004 0.001 0.013 0.938 0.001 0.001 0.001 0.003 0.029 0.003 0.006 58 V 0.005 0.001 0.006 0.002 0.021 0.898 0.001 0.001 0.001 0.004 0.046 0.004 0.013 59 I 0.014 0.010 0.050 0.006 0.037 0.682 0.001 0.001 0.004 0.019 0.119 0.019 0.038 60 K 0.006 0.008 0.174 0.007 0.036 0.347 0.001 0.001 0.005 0.067 0.277 0.047 0.025 61 E 0.001 0.005 0.102 0.003 0.029 0.087 0.001 0.001 0.003 0.092 0.660 0.005 0.012 62 G 0.001 0.010 0.229 0.003 0.025 0.026 0.001 0.001 0.003 0.246 0.435 0.014 0.007 63 N 0.001 0.019 0.573 0.001 0.016 0.013 0.001 0.001 0.005 0.248 0.089 0.015 0.020 64 A 0.001 0.056 0.613 0.002 0.018 0.014 0.001 0.001 0.009 0.198 0.053 0.010 0.025 65 S 0.001 0.019 0.760 0.002 0.015 0.008 0.001 0.001 0.008 0.129 0.019 0.027 0.013 66 P 0.001 0.031 0.537 0.003 0.109 0.039 0.001 0.001 0.007 0.115 0.105 0.007 0.044 67 F 0.001 0.032 0.413 0.005 0.189 0.051 0.001 0.001 0.006 0.114 0.147 0.019 0.020 68 Q 0.001 0.020 0.356 0.004 0.174 0.060 0.001 0.001 0.008 0.123 0.214 0.010 0.029 69 N 0.001 0.021 0.337 0.002 0.119 0.059 0.001 0.001 0.007 0.190 0.240 0.007 0.016 70 K 0.001 0.024 0.399 0.002 0.091 0.035 0.001 0.001 0.004 0.256 0.172 0.008 0.009 71 Q 0.001 0.020 0.515 0.001 0.058 0.025 0.001 0.001 0.005 0.235 0.116 0.008 0.015 72 E 0.001 0.027 0.404 0.001 0.071 0.069 0.001 0.001 0.005 0.162 0.243 0.004 0.014 73 E 0.001 0.046 0.488 0.001 0.029 0.071 0.001 0.001 0.005 0.270 0.076 0.010 0.004 74 T 0.001 0.003 0.872 0.001 0.010 0.037 0.001 0.001 0.001 0.059 0.005 0.001 0.010 75 E 0.001 0.001 0.012 0.001 0.020 0.954 0.001 0.001 0.001 0.003 0.011 0.001 0.001 76 T 0.001 0.001 0.002 0.001 0.015 0.976 0.001 0.001 0.001 0.002 0.005 0.001 0.001 77 D 0.001 0.001 0.002 0.001 0.013 0.982 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 79 N 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 80 V 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 81 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 82 A 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.007 0.001 0.001 83 K 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.007 0.001 0.001 84 T 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.012 0.001 0.001 85 Y 0.001 0.001 0.001 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.010 0.001 0.001 86 T 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 87 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 T 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 92 I 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 93 L 0.001 0.001 0.001 0.001 0.034 0.955 0.001 0.001 0.001 0.001 0.011 0.001 0.001 94 E 0.001 0.001 0.001 0.001 0.035 0.869 0.001 0.001 0.001 0.001 0.095 0.001 0.001 95 Q 0.001 0.001 0.015 0.001 0.020 0.636 0.001 0.001 0.001 0.011 0.314 0.001 0.001 96 L 0.001 0.021 0.296 0.001 0.005 0.364 0.001 0.001 0.002 0.206 0.103 0.002 0.001 97 T 0.001 0.001 0.913 0.001 0.001 0.006 0.001 0.001 0.001 0.070 0.008 0.001 0.001 98 E 0.001 0.001 0.036 0.001 0.157 0.643 0.001 0.001 0.001 0.007 0.157 0.001 0.001 99 E 0.001 0.001 0.012 0.001 0.428 0.519 0.001 0.001 0.001 0.012 0.028 0.001 0.001 100 Q 0.001 0.001 0.005 0.001 0.709 0.277 0.001 0.001 0.001 0.003 0.004 0.001 0.001 101 L 0.001 0.005 0.065 0.001 0.158 0.620 0.001 0.001 0.020 0.021 0.104 0.001 0.005 102 D 0.001 0.007 0.155 0.004 0.103 0.350 0.001 0.001 0.009 0.047 0.309 0.007 0.008 103 R 0.002 0.008 0.152 0.003 0.068 0.249 0.001 0.001 0.012 0.115 0.364 0.014 0.014 104 E 0.006 0.024 0.392 0.006 0.026 0.142 0.003 0.002 0.015 0.115 0.178 0.012 0.079 105 I 0.012 0.030 0.496 0.007 0.021 0.063 0.004 0.005 0.038 0.155 0.037 0.104 0.029 106 D 0.009 0.019 0.554 0.006 0.022 0.056 0.005 0.006 0.068 0.076 0.037 0.035 0.107 107 L 0.011 0.048 0.367 0.026 0.079 0.065 0.007 0.010 0.071 0.093 0.080 0.052 0.093 108 T 0.008 0.022 0.481 0.023 0.049 0.036 0.003 0.003 0.032 0.110 0.071 0.093 0.069 109 S 0.004 0.029 0.426 0.007 0.099 0.035 0.001 0.001 0.020 0.122 0.139 0.019 0.097 110 A 0.003 0.028 0.210 0.011 0.064 0.043 0.001 0.001 0.009 0.164 0.413 0.036 0.018 111 F 0.001 0.016 0.128 0.005 0.031 0.022 0.001 0.001 0.005 0.185 0.575 0.015 0.015 112 G 0.002 0.023 0.276 0.004 0.027 0.012 0.001 0.001 0.002 0.312 0.317 0.008 0.017 113 R 0.002 0.023 0.545 0.004 0.010 0.021 0.001 0.001 0.007 0.216 0.039 0.112 0.022 114 K 0.003 0.071 0.426 0.005 0.008 0.055 0.002 0.001 0.011 0.111 0.062 0.008 0.237 115 V 0.004 0.047 0.461 0.012 0.006 0.125 0.001 0.001 0.008 0.161 0.019 0.144 0.014 116 T 0.002 0.006 0.605 0.003 0.006 0.222 0.001 0.001 0.004 0.051 0.007 0.011 0.084 117 G 0.001 0.001 0.010 0.001 0.007 0.966 0.001 0.001 0.001 0.002 0.008 0.001 0.004 118 R 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 A 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 121 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 122 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 123 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 124 A 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 125 M 0.001 0.001 0.001 0.001 0.002 0.988 0.001 0.001 0.001 0.001 0.009 0.001 0.001 126 E 0.001 0.001 0.002 0.001 0.003 0.970 0.001 0.001 0.001 0.001 0.024 0.001 0.001 127 H 0.001 0.001 0.004 0.001 0.006 0.924 0.001 0.001 0.001 0.007 0.057 0.001 0.001 128 E 0.001 0.002 0.025 0.001 0.032 0.842 0.001 0.001 0.001 0.019 0.075 0.001 0.002 129 I 0.001 0.002 0.038 0.001 0.037 0.742 0.001 0.001 0.002 0.026 0.149 0.001 0.003 130 H 0.001 0.003 0.040 0.001 0.067 0.686 0.001 0.001 0.002 0.021 0.177 0.001 0.002 131 H 0.001 0.004 0.042 0.001 0.023 0.793 0.001 0.001 0.001 0.040 0.094 0.001 0.002 132 K 0.001 0.002 0.028 0.001 0.008 0.861 0.001 0.001 0.001 0.021 0.077 0.001 0.002 133 G 0.001 0.001 0.023 0.001 0.003 0.892 0.001 0.001 0.001 0.032 0.047 0.001 0.001 134 N 0.001 0.001 0.022 0.001 0.002 0.964 0.001 0.001 0.001 0.006 0.002 0.001 0.002 135 L 0.001 0.001 0.003 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 136 F 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 137 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.002 138 Y 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 139 V 0.001 0.001 0.001 0.001 0.011 0.986 0.001 0.001 0.001 0.001 0.003 0.001 0.001 140 R 0.001 0.001 0.001 0.001 0.004 0.987 0.001 0.001 0.001 0.001 0.009 0.001 0.001 141 E 0.001 0.001 0.001 0.001 0.013 0.968 0.001 0.001 0.001 0.001 0.017 0.001 0.001 142 M 0.001 0.001 0.007 0.001 0.006 0.549 0.001 0.001 0.001 0.012 0.421 0.001 0.001 143 G 0.001 0.001 0.048 0.001 0.002 0.029 0.001 0.001 0.001 0.041 0.876 0.001 0.001 144 H 0.001 0.007 0.767 0.001 0.005 0.012 0.001 0.001 0.002 0.134 0.065 0.002 0.006 145 T 0.001 0.019 0.700 0.001 0.005 0.008 0.001 0.001 0.014 0.214 0.023 0.009 0.007 146 E 0.001 0.035 0.651 0.002 0.045 0.015 0.001 0.002 0.065 0.127 0.037 0.007 0.015 147 L 0.001 0.013 0.739 0.002 0.036 0.013 0.001 0.001 0.041 0.113 0.020 0.011 0.011 148 P 0.001 0.017 0.549 0.003 0.113 0.046 0.001 0.001 0.024 0.099 0.102 0.008 0.037 149 F 0.001 0.029 0.372 0.006 0.158 0.078 0.001 0.001 0.026 0.135 0.159 0.015 0.020 150 Y 0.001 0.019 0.477 0.004 0.136 0.060 0.001 0.001 0.010 0.149 0.101 0.015 0.028 151 Q 0.001 0.018 0.323 0.005 0.176 0.137 0.001 0.001 0.007 0.115 0.178 0.008 0.032 152 Q 0.002 0.030 0.278 0.006 0.170 0.186 0.001 0.001 0.011 0.123 0.140 0.024 0.029 153 R 0.005 0.039 0.379 0.006 0.080 0.143 0.001 0.001 0.015 0.149 0.092 0.023 0.068 154 M 0.003 0.014 0.634 0.005 0.039 0.077 0.001 0.001 0.008 0.105 0.051 0.026 0.037