# List of top-scoring protein chains for T0481.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ou6A	190	1.85e-10		
1rxqA	178	2.92e-10	a.213.1.1	105118
2qe9A	178	4.08e-10		
2rd9A	193	2.36e-08		
3cexA	172	2.34e-07		
2yqyA	169	1.15e-06		
2p1aA	154	1.20e-06		
2hkvA	149	3.32e-06		
2f22A	144	9.12e-06	a.213.1.2	132795
2qnlA	162	1.45e-05		
2oqmA	192	2.981		
1f5mA	180	6.471	d.110.2.1	40895
2ixnA	310	11.53	a.268.1.1	137777
2nsfA	261	16.33		
2jo7A	224	28.97		
1c12A	214	30.34	b.1.1.1,b.1.1.2	20380,21372
2hqrA	223	37.49		
1opkA	495	46.71	b.34.2.1,d.93.1.1,d.144.1.7	87232,87233,87234
2fo0A	495	49.26	b.34.2.1,d.93.1.1,d.144.1.7	133862,133863,133864
1bsmA	201	51.38	a.2.11.1,d.44.1.1	15780,38743
1oplA	537	51.67	b.34.2.1,d.93.1.1,d.144.1.7	87235,87236,87237
1c7qA	445	52.65	c.80.1.2	35307
2r60A	499	56.62		
2p6pA	384	69.16		
2oi9C	121	76.67		
2dq4A	343	77.41		
1cb1A	78	89.69	a.39.1.1	17156