# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	1.28e-21		
2hkvA	149	3.14e-21		
2ou6A	190	5.48e-21		
3cexA	172	7.45e-20		
1rxqA	178	2.01e-19	a.213.1.1	105118
2p1aA	154	1.14e-14		
2yqyA	169	1.21e-10		
2f22A	144	2.45e-09	a.213.1.2	132795
2nsfA	261	5.58e-08		
2qnlA	162	5.79e-08		
2cw2A	226	1.584		
1kkcA	221	11.46	a.2.11.1,d.44.1.1	68660,68661
2nybA	192	13.48	a.2.11.1,d.44.1.1	138804,138805
2ogiA	196	14.51		
1xgkA	352	18.52	c.2.1.2	115286
1oihA	301	19.10	b.82.2.5	93051
1wyuA	438	20.68	c.67.1.7	121452
1e6uA	321	22.13	c.2.1.2	29805
1i40A	175	22.77	b.40.5.1	66024
2arhA	203	22.87	d.108.1.9	127197
2i09A	403	23.08	c.76.1.5,d.327.1.1	136946,136947
2p5yA	311	24.03		
1xreA	217	24.99		
1rybA	212	26.40	c.56.3.1	98098
1k6xA	352	27.45	c.2.1.2	68238
2hdwA	367	30.78		
2awpA	198	31.50		
1e9gA	286	32.78	b.40.5.1	59393
2cw3A	280	34.34		
2po1B	277	34.84		
1a53	247	37.58		
1iscA	192	37.83	a.2.11.1,d.44.1.1	15733,38726
3bj6A	152	38.23		
1ffyA	917	39.56	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
2gojA	197	40.31		
2fbiA	142	40.32	a.4.5.28	133246
1vqzA	341	41.15	d.224.1.3,d.104.1.3	120426,120427
1o5hA	214	41.70	a.191.1.1	92497
1zpyA	95	42.56	a.25.1.5	125479
1unfX	238	42.83	a.2.11.1,d.44.1.1	113314,113315
2hrzA	342	43.43		
3broA	141	43.66		
2gykB	134	44.23	d.4.1.1	135857
2olrA	540	44.51	c.91.1.1,c.109.1.1	139140,139141
1k9uA	78	45.16	a.39.1.10	84348
1ylhA	560	46.68		
1vdkA	466	46.97	a.127.1.1	100561
2qacA	146	49.56		
1my6A	199	49.99	a.2.11.1,d.44.1.1	85232,85233
2zfdA	226	50.37		
1uerA	191	50.41	a.2.11.1,d.44.1.1	107790,107791
2v7kA	361	55.61		
2o08A	188	56.28		
2j27A	250	59.36		
1ppjA	446	59.47	d.185.1.1,d.185.1.1	104252,104253
1xel	338	61.17		
2pa5A	314	61.86		
1z7aA	308	62.07	c.6.2.6	124591
3ceiA	213	64.64		
1gv3A	248	64.82	a.2.11.1,d.44.1.1	70585,70586
1wx1A	335	65.63		
1yz7A	188	67.51		
2dy1A	665	70.70		
1ed8A	449	70.72	c.76.1.1	34988
2vlqB	134	70.99		
2yzsA	315	71.61		
1w7jB	151	72.68	a.39.1.5	120690
2qc0A	373	73.27		
2nyxA	168	73.30		
2jo7A	224	76.57		
2cghA	268	77.53		
1j3bA	529	78.38	c.91.1.1,c.109.1.1	77071,77072
1qydA	313	79.09	c.2.1.2	96583
1uumA	372	81.08	c.1.4.1	100010
2c46A	241	81.80		
1wvgA	359	81.81	c.2.1.2	121339
1ikpA	613	82.59	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
2gpcA	194	83.76		
2gv5A	161	85.95		
2iucA	375	86.43		
1qycA	308	88.34	c.2.1.2	96581
1f4qA	165	89.23	a.39.1.8	17360