# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	3.56e-22		
2ou6A	190	1.00e-21		
2hkvA	149	1.84e-21		
3cexA	172	2.87e-20		
1rxqA	178	1.90e-19	a.213.1.1	105118
2p1aA	154	5.22e-15		
2yqyA	169	1.78e-10		
2f22A	144	3.07e-09	a.213.1.2	132795
2nsfA	261	7.36e-08		
2qnlA	162	8.88e-08		
2cw2A	226	8.939		
2ogiA	196	9.826		
2po1B	277	12.96		
2qc0A	373	13.27		
1oihA	301	13.87	b.82.2.5	93051
1k6xA	352	17.91	c.2.1.2	68238
2arhA	203	17.98	d.108.1.9	127197
1e9gA	286	19.52	b.40.5.1	59393
1o5hA	214	22.27	a.191.1.1	92497
1i40A	175	26.42	b.40.5.1	66024
1zpyA	95	27.48	a.25.1.5	125479
1xdiA	499	28.47	c.3.1.5,d.87.1.1	115160,115161
2i09A	403	28.85	c.76.1.5,d.327.1.1	136946,136947
1wyuA	438	29.15	c.67.1.7	121452
1vqzA	341	29.15	d.224.1.3,d.104.1.3	120426,120427
1ffyA	917	29.57	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
1ylhA	560	34.90		
2o08A	188	35.91		
2nybA	192	36.47	a.2.11.1,d.44.1.1	138804,138805
2hdwA	367	36.59		
1vdkA	466	36.74	a.127.1.1	100561
1s3qA	173	38.27	a.25.1.1	118848
2zfdA	226	38.70		
1a53	247	39.04		
2fa5A	162	41.29		
1wx1A	335	45.84		
1ed8A	449	45.93	c.76.1.1	34988
2pa5A	314	46.85		
3bj6A	152	48.26		
1kkcA	221	48.66	a.2.11.1,d.44.1.1	68660,68661
1xgkA	352	52.87	c.2.1.2	115286
2jo7A	224	53.44		
1h6vA	499	54.41	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2nyxA	168	54.86		
2vlqB	134	54.87		
3broA	141	55.84		
2j27A	250	56.42		
1e6uA	321	57.74	c.2.1.2	29805
1p68A	102	58.79	k.8.1.1	94158
1w7jB	151	59.25	a.39.1.5	120690
2hrzA	342	59.91		
1jdlA	121	61.94	a.3.1.1	66557
2ouxA	286	62.03		
1lb3A	182	62.50	a.25.1.1	77873
1j33A	335	63.52	c.39.1.1	77069
2nzxA	371	63.83		
2qacA	146	63.87		
2olrA	540	66.17	c.91.1.1,c.109.1.1	139140,139141
2nnnA	140	66.20		
2fafA	608	66.76		
2gykB	134	67.02	d.4.1.1	135857
1yz7A	188	70.46		
1k9uA	78	71.21	a.39.1.10	84348
3b4tA	262	71.65		
1rybA	212	74.22	c.56.3.1	98098
1s6lA	212	74.84		
2fbiA	142	77.92	a.4.5.28	133246
1z7aA	308	78.82	c.6.2.6	124591
2dy1A	665	79.88		
2p5yA	311	81.47		
1w5cF	44	82.69	i.5.1.1	114220
2vrwB	406	82.71