# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	7.15e-18		
2ou6A	190	2.80e-17		
2hkvA	149	3.31e-17		
3cexA	172	1.62e-16		
1rxqA	178	1.20e-15	a.213.1.1	105118
2p1aA	154	1.43e-11		
2yqyA	169	6.34e-09		
2f22A	144	4.82e-08	a.213.1.2	132795
2nsfA	261	3.61e-07		
2qnlA	162	3.33e-06		
2cw2A	226	11.68		
2qc0A	373	16.00		
1o5hA	214	18.00	a.191.1.1	92497
1oihA	301	22.72	b.82.2.5	93051
2ogiA	196	26.88		
2o08A	188	29.62		
2yzsA	315	32.86		
2pa5A	314	34.09		
1kkcA	221	35.90	a.2.11.1,d.44.1.1	68660,68661
2jo7A	224	36.78		
2nyxA	168	38.12		
2zfdA	226	42.09		
2i09A	403	42.50	c.76.1.5,d.327.1.1	136946,136947
3bj6A	152	42.97		
1qghA	156	44.11	a.25.1.1	16728
1q2lA	939	46.67	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2nybA	192	47.68	a.2.11.1,d.44.1.1	138804,138805
2c46A	241	48.37		
1ppjA	446	48.74	d.185.1.1,d.185.1.1	104252,104253
1k9uA	78	48.93	a.39.1.10	84348
1e9gA	286	49.51	b.40.5.1	59393
2arhA	203	49.75	d.108.1.9	127197
1r8gA	372	51.74	d.128.1.3	104845
1z7aA	308	51.81	c.6.2.6	124591
2hdwA	367	51.91		
1dxy	333	52.20		
2qacA	146	53.33		
2po1B	277	56.21		
2vhlA	396	57.71		
1rybA	212	57.78	c.56.3.1	98098
1ffyA	917	58.06	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
1yz7A	188	58.20		
1a53	247	60.15		
1ylhA	560	60.37		
2dp3A	257	60.39		
2j13A	247	62.27	c.6.2.3	137934
1pfvA	551	64.33	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
1s6lA	212	64.65		
1f4qA	165	65.27	a.39.1.8	17360
2j27A	250	65.47		
3broA	141	65.69		
1i40A	175	65.79	b.40.5.1	66024
2fbiA	142	65.85	a.4.5.28	133246
1wx1A	335	65.96		
1e6uA	321	66.90	c.2.1.2	29805
2olrA	540	68.28	c.91.1.1,c.109.1.1	139140,139141
1w7jB	151	72.11	a.39.1.5	120690
2gykB	134	72.58	d.4.1.1	135857
1vdkA	466	75.23	a.127.1.1	100561
1h6vA	499	80.71	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1zzgA	415	82.23		
1b06A	210	82.72	a.2.11.1,d.44.1.1	15740,38737
1mo9A	523	85.18	c.3.1.5,c.3.1.5,d.87.1.1	79341,79342,79343
2awpA	198	85.75		
1pbjA	125	87.28	d.37.1.1,d.37.1.1	94414,94415
2hrzA	342	88.48		
2oa8A	233	89.06		
1j3bA	529	89.15	c.91.1.1,c.109.1.1	77071,77072
1q6zA	528	89.29	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657