# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	1.88e-18		
2ou6A	190	6.48e-18		
2hkvA	149	6.88e-18		
3cexA	172	4.78e-17		
1rxqA	178	4.60e-16	a.213.1.1	105118
2p1aA	154	9.36e-12		
2yqyA	169	3.54e-09		
2f22A	144	2.50e-08	a.213.1.2	132795
2nsfA	261	3.21e-07		
2qnlA	162	1.99e-06		
2cw2A	226	6.242		
1o5hA	214	12.50	a.191.1.1	92497
2qc0A	373	12.84		
1oihA	301	17.19	b.82.2.5	93051
2ogiA	196	21.78		
1kkcA	221	25.69	a.2.11.1,d.44.1.1	68660,68661
2o08A	188	26.98		
2nybA	192	27.47	a.2.11.1,d.44.1.1	138804,138805
2pa5A	314	29.18		
1qghA	156	29.55	a.25.1.1	16728
2yzsA	315	31.60		
3bj6A	152	39.21		
2nyxA	168	39.29		
2hdwA	367	39.38		
2awpA	198	40.59		
1e9gA	286	40.78	b.40.5.1	59393
2jo7A	224	41.28		
1e6uA	321	42.73	c.2.1.2	29805
1k9uA	78	43.06	a.39.1.10	84348
1r8gA	372	43.44	d.128.1.3	104845
2po1B	277	44.83		
2zfdA	226	45.28		
1wyuA	438	47.03	c.67.1.7	121452
2i09A	403	47.31	c.76.1.5,d.327.1.1	136946,136947
1ffyA	917	47.83	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
2fbiA	142	48.03	a.4.5.28	133246
1rybA	212	48.31	c.56.3.1	98098
2c2jA	211	49.72		
2arhA	203	51.15	d.108.1.9	127197
1a53	247	52.05		
2c46A	241	52.44		
1ppjA	446	52.44	d.185.1.1,d.185.1.1	104252,104253
1dxy	333	52.50		
1yz7A	188	52.52		
1wx1A	335	55.03		
2j13A	247	55.48	c.6.2.3	137934
2v7kA	361	55.79		
1z7aA	308	56.28	c.6.2.6	124591
3broA	141	56.77		
1ylhA	560	56.96		
1i40A	175	59.84	b.40.5.1	66024
2olrA	540	61.00	c.91.1.1,c.109.1.1	139140,139141
1q2lA	939	61.32	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2oa8A	233	68.24		
1uerA	191	70.10	a.2.11.1,d.44.1.1	107790,107791
1b06A	210	73.71	a.2.11.1,d.44.1.1	15740,38737
2bk6A	156	73.93	a.25.1.1	128660
2dy1A	665	74.09		
1f4qA	165	74.87	a.39.1.8	17360
2dp3A	257	75.13		
1xreA	217	75.71		
2vhlA	396	76.43		
2j27A	250	76.82		
1pbjA	125	77.58	d.37.1.1,d.37.1.1	94414,94415
2nzxA	371	79.74		
2hrzA	342	80.34		
2qacA	146	81.31		
1iscA	192	83.27	a.2.11.1,d.44.1.1	15733,38726
1vdkA	466	84.74	a.127.1.1	100561
2gxgA	146	85.18		
1h6vA	499	88.41	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1zzgA	415	88.51		
2p5yA	311	89.04