# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	7.23e-19		
2hkvA	149	2.59e-18		
2ou6A	190	2.63e-18		
3cexA	172	1.69e-17		
1rxqA	178	2.13e-16	a.213.1.1	105118
2p1aA	154	5.55e-12		
2yqyA	169	3.31e-09		
2f22A	144	2.69e-08	a.213.1.2	132795
2nsfA	261	3.36e-07		
2qnlA	162	1.72e-06		
2cw2A	226	7.562		
1o5hA	214	15.83	a.191.1.1	92497
2ogiA	196	16.46		
1oihA	301	17.99	b.82.2.5	93051
2qc0A	373	19.13		
1kkcA	221	21.10	a.2.11.1,d.44.1.1	68660,68661
2hdwA	367	24.34		
1a53	247	25.18		
2nybA	192	28.08	a.2.11.1,d.44.1.1	138804,138805
2pa5A	314	30.00		
1rybA	212	32.69	c.56.3.1	98098
3bj6A	152	33.72		
1qghA	156	36.41	a.25.1.1	16728
2jo7A	224	37.52		
2o08A	188	39.09		
2i09A	403	39.95	c.76.1.5,d.327.1.1	136946,136947
2nzxA	371	44.70		
1k9uA	78	45.08	a.39.1.10	84348
1ppjA	446	45.94	d.185.1.1,d.185.1.1	104252,104253
1s6lA	212	46.30		
2awpA	198	46.60		
2c46A	241	47.05		
1r8gA	372	50.17	d.128.1.3	104845
2yzsA	315	53.52		
1z7aA	308	53.89	c.6.2.6	124591
2v7kA	361	55.64		
2nyxA	168	56.03		
1wx1A	335	56.63		
2po1B	277	56.76		
1e6uA	321	57.90	c.2.1.2	29805
2fbiA	142	58.16	a.4.5.28	133246
2qacA	146	62.33		
1q2lA	939	63.71	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2j13A	247	64.00	c.6.2.3	137934
2c2jA	211	65.05		
1wyuA	438	65.71	c.67.1.7	121452
3broA	141	66.25		
1ffyA	917	66.99	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
1tr8A	102	69.39		
2etxA	209	69.48		
1dxy	333	69.69		
2gxgA	146	72.96		
2zfdA	226	74.24		
1b06A	210	74.69	a.2.11.1,d.44.1.1	15740,38737
2arhA	203	75.03	d.108.1.9	127197
2olrA	540	79.72	c.91.1.1,c.109.1.1	139140,139141
1zzgA	415	80.22		
1i40A	175	80.75	b.40.5.1	66024
2p5yA	311	80.82		
1f4qA	165	81.22	a.39.1.8	17360
3cc8A	230	81.34		
2hrzA	342	82.11		
1uerA	191	83.12	a.2.11.1,d.44.1.1	107790,107791
2bk6A	156	83.31	a.25.1.1	128660
2oa8A	233	84.17		
1w7jB	151	84.26	a.39.1.5	120690
2dp3A	257	84.83		
2bv5A	282	85.29		
1i9sA	210	85.84	c.45.1.1	62099
2vhlA	396	87.11