# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	8.24e-21		
2ou6A	190	8.59e-20		
2hkvA	149	8.63e-20		
3cexA	172	1.16e-18		
1rxqA	178	3.19e-18	a.213.1.1	105118
2p1aA	154	1.09e-13		
2yqyA	169	3.91e-10		
2f22A	144	6.19e-09	a.213.1.2	132795
2nsfA	261	2.96e-07		
2qnlA	162	3.85e-07		
2cw2A	226	2.499		
2ogiA	196	10.88		
2nybA	192	12.14	a.2.11.1,d.44.1.1	138804,138805
2arhA	203	16.07	d.108.1.9	127197
1oihA	301	16.91	b.82.2.5	93051
1e9gA	286	17.28	b.40.5.1	59393
2hdwA	367	18.99		
1iscA	192	19.43	a.2.11.1,d.44.1.1	15733,38726
1kkcA	221	21.35	a.2.11.1,d.44.1.1	68660,68661
1vqzA	341	23.98	d.224.1.3,d.104.1.3	120426,120427
1avmA	201	25.25	a.2.11.1,d.44.1.1	15782,38745
2i09A	403	29.59	c.76.1.5,d.327.1.1	136946,136947
1zpyA	95	30.08	a.25.1.5	125479
1xreA	217	31.39		
1bsmA	201	32.40	a.2.11.1,d.44.1.1	15780,38743
2pa5A	314	32.49		
2awpA	198	33.30		
2olrA	540	33.43	c.91.1.1,c.109.1.1	139140,139141
1xgkA	352	33.71	c.2.1.2	115286
1k9uA	78	34.39	a.39.1.10	84348
2gojA	197	35.09		
1r0kA	388	35.15	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
1k6xA	352	36.10	c.2.1.2	68238
1e6uA	321	36.15	c.2.1.2	29805
1unfX	238	36.33	a.2.11.1,d.44.1.1	113314,113315
2po1B	277	36.50		
1lb3A	182	37.96	a.25.1.1	77873
2o08A	188	38.00		
2qacA	146	38.54		
2cw3A	280	39.46		
1ylhA	560	44.23		
2vlqB	134	44.41		
1ed8A	449	44.89	c.76.1.1	34988
1i40A	175	46.66	b.40.5.1	66024
1b06A	210	47.90	a.2.11.1,d.44.1.1	15740,38737
2gykB	134	51.62	d.4.1.1	135857
2qc0A	373	54.77		
1yz7A	188	57.62		
1s3qA	173	59.25	a.25.1.1	118848
2cghA	268	60.42		
3by4A	212	62.09		
1xel	338	63.03		
1biaA	321	64.23	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
2j27A	250	65.60		
2vhlA	396	68.95		
1w7jB	151	72.33	a.39.1.5	120690
1ffyA	917	74.27	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
1i0hA	205	74.67	a.2.11.1,d.44.1.1	15760,38685
1my6A	199	76.78	a.2.11.1,d.44.1.1	85232,85233
1xdiA	499	77.89	c.3.1.5,d.87.1.1	115160,115161
1o5hA	214	79.33	a.191.1.1	92497
1ohuA	175	79.80	f.1.4.1	93029
1uerA	191	82.50	a.2.11.1,d.44.1.1	107790,107791
1j3bA	529	85.63	c.91.1.1,c.109.1.1	77071,77072
2nzxA	371	85.84		
1tr8A	102	86.19		
2dy1A	665	86.28		
1tpfA	250	86.74	c.1.1.1	28467
1s6lA	212	86.81		
3ceiA	213	87.61		
2gpcA	194	88.51		
1z7aA	308	88.79	c.6.2.6	124591
1a53	247	89.62