# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 8.44e-22 2hkvA 149 7.93e-21 2ou6A 190 2.63e-20 3cexA 172 6.32e-20 1rxqA 178 7.11e-19 a.213.1.1 105118 2p1aA 154 4.05e-14 2yqyA 169 2.08e-10 2f22A 144 4.25e-09 a.213.1.2 132795 2nsfA 261 1.61e-08 2qnlA 162 8.92e-07 2po1B 277 1.366 1k7hA 476 3.007 c.76.1.1 72101 1htyA 1015 6.298 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2bvfA 459 7.319 2nutA 769 7.609 1e9gA 286 8.964 b.40.5.1 59393 1qghA 156 10.69 a.25.1.1 16728 2je6A 277 10.87 1f4qA 165 11.96 a.39.1.8 17360 1lb3A 182 12.92 a.25.1.1 77873 1biaA 321 14.81 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1sl8A 191 15.03 a.39.1.5 112099 1zpyA 95 15.94 a.25.1.5 125479 1ew2A 513 16.09 c.76.1.1 59525 1xdiA 499 16.95 c.3.1.5,d.87.1.1 115160,115161 3bf0A 593 17.02 1kkcA 221 18.79 a.2.11.1,d.44.1.1 68660,68661 2nwbA 400 18.94 2nybA 192 21.11 a.2.11.1,d.44.1.1 138804,138805 1wx1A 335 23.70 1h6vA 499 24.72 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1jdwA 423 25.63 d.126.1.2 41129 2zfdA 226 26.25 2cihA 183 28.75 2cw2A 226 29.21 2c46A 241 29.30 1avmA 201 29.58 a.2.11.1,d.44.1.1 15782,38745 1iscA 192 29.94 a.2.11.1,d.44.1.1 15733,38726 2j3mA 572 29.99 1lvlA 458 31.02 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1oneA 436 32.37 c.1.11.1,d.54.1.1 29200,38844 1vqzA 341 34.67 d.224.1.3,d.104.1.3 120426,120427 1yw5A 177 35.20 1eg5A 384 36.60 c.67.1.3 34429 2oa8A 233 36.99 1ppjA 446 37.15 d.185.1.1,d.185.1.1 104252,104253 1bsmA 201 37.35 a.2.11.1,d.44.1.1 15780,38743 1o5hA 214 39.20 a.191.1.1 92497 1qw9A 502 39.39 b.71.1.2,c.1.8.3 96466,96467 1k6xA 352 42.90 c.2.1.2 68238 2ogiA 196 43.22 2hpsA 186 43.60 2pa6A 427 44.00 1bgvA 449 44.11 c.2.1.7,c.58.1.1 30217,33865 1gy8A 397 44.39 c.2.1.2 83376 1zu0A 529 44.76 2yzsA 315 45.11 1xwl 580 45.76 2scpA 174 46.17 a.39.1.5 17256 1mo9A 523 46.26 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1xreA 217 46.76 2q4xA 221 46.96 a.132.1.3 139880 1yz7A 188 48.50 1pfvA 551 48.69 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1sb8A 352 49.19 c.2.1.2 105410 1xgkA 352 49.38 c.2.1.2 115286 2fpqA 444 50.23 1g5gA 481 50.26 f.12.1.1,h.3.2.1 65155,65156 1djxB 624 50.61 a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 2o08A 188 51.26 1k9uA 78 52.14 a.39.1.10 84348 1lm7A 248 54.57 d.211.2.1 74031 1l5oA 356 54.74 c.39.1.1 77711 1huxA 270 58.22 c.55.1.5 61278 1j33A 335 58.68 c.39.1.1 77069 1unfX 238 59.22 a.2.11.1,d.44.1.1 113314,113315 1gaiA 472 59.36 a.102.1.1 18819 1s3qA 173 59.37 a.25.1.1 118848 1tt0A 623 59.65 1uumA 372 59.73 c.1.4.1 100010 3bu3A 306 61.28 1hrdA 449 61.69 c.2.1.7,c.58.1.1 30219,33867 2uz1A 563 62.02 1oy3D 282 62.29 d.211.1.1 87554 2furA 209 62.66 b.45.1.1 134185 3c4nA 405 63.28 2bl0C 142 65.09 1nf2A 268 66.09 c.108.1.10 91849 1qwzA 235 66.56 b.100.1.1 96510 1omiA 248 67.50 b.82.3.3,a.4.5.4 87079,87080 1i40A 175 67.59 b.40.5.1 66024 2vhlA 396 72.15 1b8fA 509 74.26 a.127.1.2 19434 2qddA 378 75.37 1qs0A 407 76.46 c.36.1.11 31829 2rfmA 192 77.91 2gv5A 161 79.12 3b85A 208 80.66 1uohA 226 80.72 d.211.1.1 99690 1wdkC 390 82.98 c.95.1.1,c.95.1.1 109258,109259 2vrwB 406 83.67 1tr8A 102 85.58 2pgeA 377 85.69 2aqwA 332 86.49 c.1.2.3 127184 1pwhA 327 87.15 c.79.1.1 95224 1l5aA 436 87.56 c.43.1.2,c.43.1.2 75923,75924 1ohuA 175 88.09 f.1.4.1 93029 1topA 162 88.47 a.39.1.5 17223