# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	1.14e-20		
2hkvA	149	8.13e-20		
2ou6A	190	1.07e-19		
3cexA	172	1.03e-18		
1rxqA	178	7.03e-18	a.213.1.1	105118
2p1aA	154	9.56e-14		
2yqyA	169	5.72e-10		
2f22A	144	8.81e-09	a.213.1.2	132795
2nsfA	261	5.70e-07		
2qnlA	162	8.37e-07		
2cw2A	226	1.933		
2nybA	192	11.64	a.2.11.1,d.44.1.1	138804,138805
2ogiA	196	12.91		
1iscA	192	17.70	a.2.11.1,d.44.1.1	15733,38726
1oihA	301	18.43	b.82.2.5	93051
1kkcA	221	18.70	a.2.11.1,d.44.1.1	68660,68661
1vqzA	341	20.33	d.224.1.3,d.104.1.3	120426,120427
2hdwA	367	25.11		
1e9gA	286	25.82	b.40.5.1	59393
2arhA	203	25.95	d.108.1.9	127197
2cw3A	280	27.07		
1avmA	201	27.77	a.2.11.1,d.44.1.1	15782,38745
1lb3A	182	28.10	a.25.1.1	77873
2pa5A	314	29.68		
2i09A	403	29.80	c.76.1.5,d.327.1.1	136946,136947
2olrA	540	30.68	c.91.1.1,c.109.1.1	139140,139141
2awpA	198	30.73		
2gojA	197	31.98		
1zpyA	95	32.45	a.25.1.5	125479
1bsmA	201	33.35	a.2.11.1,d.44.1.1	15780,38743
1xreA	217	35.80		
1ylhA	560	36.01		
2po1B	277	37.94		
1unfX	238	38.12	a.2.11.1,d.44.1.1	113314,113315
1k6xA	352	38.19	c.2.1.2	68238
1k9uA	78	39.37	a.39.1.10	84348
1ed8A	449	39.91	c.76.1.1	34988
2o08A	188	46.30		
2vlqB	134	47.58		
1o5hA	214	48.34	a.191.1.1	92497
1b06A	210	49.56	a.2.11.1,d.44.1.1	15740,38737
1yz7A	188	51.24		
1r0kA	388	51.39	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
1xgkA	352	53.90	c.2.1.2	115286
1rybA	212	54.04	c.56.3.1	98098
1ohuA	175	54.32	f.1.4.1	93029
2gykB	134	54.71	d.4.1.1	135857
1tr8A	102	54.88		
1biaA	321	57.18	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
2qc0A	373	57.44		
2qacA	146	59.24		
1my6A	199	59.73	a.2.11.1,d.44.1.1	85232,85233
2gpcA	194	63.62		
1i40A	175	63.64	b.40.5.1	66024
1e6uA	321	64.33	c.2.1.2	29805
2nzxA	371	66.11		
1s3qA	173	66.52	a.25.1.1	118848
1a53	247	67.63		
1w7jB	151	69.76	a.39.1.5	120690
1k7hA	476	71.23	c.76.1.1	72101
2cghA	268	73.65		
1gv3A	248	76.35	a.2.11.1,d.44.1.1	70585,70586
1uerA	191	77.18	a.2.11.1,d.44.1.1	107790,107791
1i0hA	205	78.39	a.2.11.1,d.44.1.1	15760,38685
2hrzA	342	79.88		
1wx1A	335	80.01		
3by4A	212	80.66		
2dp3A	257	83.33		
3ceiA	213	83.54		
2cihA	183	83.77		
1ffyA	917	84.59	a.27.1.1,b.51.1.1,c.26.1.1	16926,26891,31593
1z7aA	308	85.16	c.6.2.6	124591
2dy1A	665	87.62		
2f2gA	221	87.76	a.132.1.3	132816
2ebn	289	89.32