# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	5.95e-21		
2hkvA	149	1.27e-20		
2ou6A	190	2.08e-20		
3cexA	172	1.25e-19		
1rxqA	178	8.96e-19	a.213.1.1	105118
2p1aA	154	4.55e-14		
2yqyA	169	2.97e-10		
2f22A	144	3.99e-09	a.213.1.2	132795
2nsfA	261	1.74e-07		
2qnlA	162	1.82e-07		
2cw2A	226	2.967		
1oihA	301	10.24	b.82.2.5	93051
2hdwA	367	11.53		
2gykB	134	14.67	d.4.1.1	135857
2po1B	277	18.60		
1i40A	175	21.02	b.40.5.1	66024
1kkcA	221	22.65	a.2.11.1,d.44.1.1	68660,68661
2vlqB	134	29.72		
1xreA	217	30.27		
1ylhA	560	30.50		
2ogiA	196	32.45		
3broA	141	33.64		
2i09A	403	33.74	c.76.1.5,d.327.1.1	136946,136947
2cw3A	280	34.49		
2pa5A	314	35.06		
2hrzA	342	38.09		
1ppjA	446	39.13	d.185.1.1,d.185.1.1	104252,104253
2qc0A	373	40.54		
1e9gA	286	42.45	b.40.5.1	59393
2nybA	192	45.55	a.2.11.1,d.44.1.1	138804,138805
1xdiA	499	46.19	c.3.1.5,d.87.1.1	115160,115161
2jo7A	224	46.49		
1vqzA	341	48.45	d.224.1.3,d.104.1.3	120426,120427
1zpyA	95	49.61	a.25.1.5	125479
2c46A	241	49.83		
2zfdA	226	50.22		
1k6xA	352	50.70	c.2.1.2	68238
1ed8A	449	51.65	c.76.1.1	34988
1k9uA	78	51.92	a.39.1.10	84348
2arhA	203	52.46	d.108.1.9	127197
3bj6A	152	52.92		
1z7aA	308	56.75	c.6.2.6	124591
2olrA	540	57.85	c.91.1.1,c.109.1.1	139140,139141
2vhlA	396	59.01		
1wx1A	335	59.08		
1o5hA	214	59.90	a.191.1.1	92497
2qacA	146	63.40		
1e6uA	321	64.95	c.2.1.2	29805
2o08A	188	65.15		
1unfX	238	66.84	a.2.11.1,d.44.1.1	113314,113315
2o8iA	165	67.53		
2dp3A	257	67.54		
1a53	247	68.21		
2nzxA	371	68.65		
1h6vA	499	71.38	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2gqqA	163	71.72		
3bjaA	139	71.83		
2iucA	375	72.57		
2awpA	198	73.72		
2gojA	197	74.45		
1uerA	191	75.81	a.2.11.1,d.44.1.1	107790,107791
1p68A	102	77.12	k.8.1.1	94158
1my6A	199	82.38	a.2.11.1,d.44.1.1	85232,85233
1ikpA	613	82.67	b.29.1.7,d.166.1.1,f.1.5.1	66182,66183,66184
1w7jB	151	84.38	a.39.1.5	120690
2gpcA	194	84.60		
1yz7A	188	85.30		
2dy1A	665	86.38