# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	1.87e-19		
2hkvA	149	2.83e-19		
2ou6A	190	3.10e-19		
3cexA	172	8.68e-19		
1rxqA	178	1.61e-17	a.213.1.1	105118
2p1aA	154	1.07e-12		
2yqyA	169	5.01e-09		
2f22A	144	2.31e-08	a.213.1.2	132795
2nsfA	261	3.14e-07		
2qnlA	162	4.58e-07		
2olrA	540	10.61	c.91.1.1,c.109.1.1	139140,139141
1xjzA	233	12.26	a.132.1.1	122049
2cw2A	226	21.04		
2cmd	312	21.26		
1sk7A	198	21.76	a.132.1.2	105671
1f4qA	165	23.30	a.39.1.8	17360
1pbeA	394	24.90	c.3.1.2,d.16.1.2	30338,37869
1hslA	238	27.15	c.94.1.1	35804
2nybA	192	35.87	a.2.11.1,d.44.1.1	138804,138805
2cw3A	280	36.97		
1s3qA	173	37.20	a.25.1.1	118848
2ptrA	462	37.31		
1lstA	239	38.63	c.94.1.1	35755
1ylhA	560	39.49		
2ew5A	181	39.75		
2ptsA	462	40.21		
2arhA	203	41.30	d.108.1.9	127197
3d9nA	145	41.39		
1reoA	486	42.44	c.3.1.2,d.16.1.5	97325,97326
2jo7A	224	43.71		
1iscA	192	45.30	a.2.11.1,d.44.1.1	15733,38726
2ebn	289	45.57		
3cox	507	49.39		
1n45A	233	52.80	a.132.1.1	79981
2r0cA	549	53.43		
2vp4A	230	58.55		
1k94A	165	59.26	a.39.1.8	68333
2gojA	197	63.54		
1lw9A	164	63.76	d.2.1.3	84727
1wwmA	190	64.31	a.132.1.3	121363
1ko6A	187	68.56	b.119.1.1	77471
1fohA	664	68.64	c.3.1.2,c.47.1.10,d.16.1.2	30381,33078,37900
2qgaB	465	68.93		
1zd8A	227	73.78		
1k9uA	78	74.22	a.39.1.10	84348
2p3wA	112	75.60		
2dp3A	257	76.37		
1tr8A	102	76.49		
1bn7A	294	76.56	c.69.1.8	34677
1ppjA	446	76.75	d.185.1.1,d.185.1.1	104252,104253
3cl6A	308	76.80		
1fn9A	365	77.41	d.196.1.1	59894
1tpfA	250	77.43	c.1.1.1	28467
1p36A	164	80.47	d.2.1.3	93978
2fq3A	104	83.18	a.4.1.18	133936
2nyxA	168	83.50		
2gxgA	146	85.59		
2awpA	198	85.69		
1oktA	211	86.45	a.45.1.1,c.47.1.5	93272,93273
1ur1A	378	86.80	c.1.8.3	99804