# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ou6A 190 6.19e-14 2qe9A 178 4.08e-13 3cexA 172 4.76e-13 1rxqA 178 2.63e-11 a.213.1.1 105118 2hkvA 149 8.01e-10 2p1aA 154 8.20e-09 2nsfA 261 1.14e-05 2f22A 144 5.15e-05 a.213.1.2 132795 2yqyA 169 6.00e-05 2qnlA 162 0.000136 1lm5A 214 2.792 d.211.2.1 74029 1vq0A 302 4.294 d.193.1.1,g.81.1.1 114000,114001 1i6pA 220 4.395 c.53.2.1 61848 1xl7A 612 5.572 c.43.1.3,c.43.1.3 115438,115439 2debA 653 7.207 1u3aA 189 7.831 c.47.1.13 119504 2cwlA 302 9.066 a.25.1.3 130927 2qgsA 225 9.808 1o08A 221 10.02 c.108.1.6 86525 2qklB 95 14.76 2cxnA 557 15.44 2v8tA 302 16.51 1yioA 208 17.05 a.4.6.2,c.23.1.1 123326,123327 1u0fA 564 17.97 c.80.1.2 112912 2yzsA 315 21.84 3brqA 296 23.02 1nstA 325 24.09 c.37.1.5 31951 1h3fA 432 24.19 c.26.1.1,d.66.1.4 76631,76632 1tkkA 366 26.07 c.1.11.2,d.54.1.1 107089,107090 1eejA 216 27.04 c.47.1.9,d.17.3.1 33057,38071 1mucA 373 30.36 c.1.11.2,d.54.1.1 29236,38880 2iorA 235 31.60 2ebdA 309 31.74 2h4tA 626 31.96 1oafA 261 32.32 a.93.1.1 86734 2qdeA 397 33.31 1tg6A 277 33.67 c.14.1.1 119236 1rhsA 296 36.19 c.46.1.2,c.46.1.2 32703,32704 2ghcX 261 36.94 1pswA 348 38.37 c.87.1.7 88287 2podA 410 39.54 2hyvA 308 41.68 1k68A 140 43.35 c.23.1.1 90943 2cybA 323 43.39 2dkzA 84 43.63 2og2A 359 46.77 1xqoA 256 47.82 a.96.1.6 115853 1tyhA 248 48.01 a.132.1.3 107458 2o2cA 613 48.66 1wueA 386 48.95 c.1.11.2,d.54.1.1 114892,114893 1jilA 420 49.19 c.26.1.1 66745 2mnr 357 51.80 1m3kA 392 53.13 c.95.1.1,c.95.1.1 78565,78566 1dqpA 230 53.78 c.61.1.1 34069 2oz8A 389 53.90 2q1zA 184 55.75 1tzzA 392 55.95 c.1.11.2,d.54.1.1 112896,112897 2hzgA 401 57.07 1t64A 377 57.78 c.42.1.2 106543 2arhA 203 58.36 d.108.1.9 127197 1uohA 226 59.67 d.211.1.1 99690 3beoA 375 60.21 2c82A 413 60.88 1i58A 189 61.11 d.122.1.3 61773 2aaoA 166 64.32 2pgeA 377 66.17 1uhnA 189 66.92 a.39.1.5 99399 1uzbA 516 67.89 c.82.1.1 100220 1e0cA 271 67.89 c.46.1.2,c.46.1.2 32717,32718 1ynpA 317 68.05 1m15A 357 69.17 a.83.1.1,d.128.1.2 78368,78369 1n08A 163 69.49 b.43.5.1 79730 1k66A 149 70.72 c.23.1.1 90941 1jftA 340 71.05 a.35.1.5,c.93.1.1 66652,66653 1p5sA 203 71.18 a.40.1.1 94147 1bea 127 71.54 1bedA 181 71.80 c.47.1.13 90330 2pibA 216 71.93 2qcxA 263 72.93 1nm2A 317 73.80 c.19.1.1,d.58.23.1 80654,80655 1zrhA 274 75.77 1afwA 393 76.78 c.95.1.1,c.95.1.1 35900,35901 1gk8I 140 76.92 d.73.1.1 65242 1tyfA 193 76.97 c.14.1.1 30885 3cawA 330 78.82 1b79A 119 79.37 a.81.1.1 18451 2q8xA 331 79.89 2ptmA 198 80.19 1beaA 127 80.87 a.52.1.2 17826 1ii2A 524 81.49 c.91.1.1,c.109.1.1 66146,66147 2yxhA 116 81.51 1br1B 150 82.05 a.39.1.5 17309 1o7dA 298 83.17 c.6.2.1 86641 1sh5A 245 83.37 a.40.1.1,a.40.1.1 105543,105544 1iuqA 367 83.63 c.112.1.1 90703 1r6lA 239 85.14 d.14.1.4,d.101.1.1 97153,97154 1iioA 84 85.45 a.39.4.1 66150 3craA 265 87.18 2rdmA 132 87.18 3cg4A 142 87.79