# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qe9A 166 2.131e-13 2hkvA 149 4.032e-11 2p1aA 144 9.556e-10 2f22A 143 1.477e-08 a.213.1.2 132795 2ou6A 184 8.944e-07 1rxqA 175 4.588e-05 a.213.1.1 105118 2yqyA 127 2.470e+00 3cexA 171 2.494e+00 2jraA 68 6.580e+00 2exnA 131 8.255e+00 b.165.1.1 132562 1dbfA 128 1.401e+01 2chsA d.79.1.2 39761 1tksA 197 1.422e+01 d.115.1.2 107114 1irsA 113 1.867e+01 1qqgA b.55.1.2 26991 1iezA 218 1.953e+01 d.115.1.2 66129 1c14A 257 1.989e+01 1eny c.2.1.2 29927 1k4iA 217 2.266e+01 d.115.1.2 72056 1snnA 220 2.493e+01 d.115.1.2 105821 1qg6A 258 2.536e+01 1eny c.2.1.2 29919 1cjwA 167 2.591e+01 1cjwA d.108.1.1 40818 2gimA 107 2.628e+01 b.6.1.1 135244 1a04A 206 2.635e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1ug0A 89 2.645e+01 a.217.1.1 107822 1as6A 336 2.647e+01 1nif b.6.1.3 23090 b.6.1.3 23091 2c71A 206 2.657e+01 c.6.2.3 130017 1y93A 159 2.716e+01 d.92.1.11 122772 1qsgA 259 2.774e+01 1eny c.2.1.2 29935 1g57A 206 2.840e+01 1g57A d.115.1.2 60253 1dx7A 49 2.919e+01 1dx7A f.3.1.1 43741 3bn1A 369 3.213e+01 1et7A 340 3.358e+01 1nif b.6.1.3 23070 b.6.1.3 23071 1enp 298 3.372e+01 1enp 1pwxA 253 3.409e+01 c.2.1.2 95262 1hcdA 119 3.504e+01 b.42.5.2 25624 1ufyA 122 3.673e+01 d.79.1.2 88489 1ny1A 236 3.755e+01 c.6.2.3 86395 2fvtA 136 3.759e+01 c.103.1.1 134225