# List of top-scoring protein chains for t2k.w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qe9A 178 1.20e-19 2ou6A 190 1.62e-10 2f22A 144 5.85e-09 a.213.1.2 132795 2hkvA 149 7.58e-08 2p1aA 154 1.35e-07 1rxqA 178 4.45e-07 a.213.1.1 105118 2yqyA 169 2.20e-06 2qnlA 162 2.53e-06 3cexA 172 4.59e-04 2rd9A 193 2.07e-03 2ejqA 130 1.72e+00 2qgiA 248 2.10e+00 2nxvA 249 2.20e+00 1nd1A 202 2.88e+00 d.92.1.9 91808 1h8lA 380 5.56e+00 b.3.2.1 65737 c.56.5.1 65738 1qmuA 380 5.56e+00 1qmuA b.3.2.1 22534 c.56.5.1 33827 1twlA 186 6.39e+00 b.40.5.1 112764 2j48A 119 8.01e+00 2vg3A 284 9.63e+00 2vg2A 284 9.63e+00 1bygA 278 9.90e+00 1fmk d.144.1.7 41705 1psuA 140 9.98e+00 d.38.1.5 88285 1udeA 195 1.02e+01 b.40.5.1 99208 1sngA 370 1.07e+01 e.1.1.1 112104 1j6uA 469 1.13e+01 c.5.1.1 77094 c.59.1.1 77095 c.72.2.1 77096 2fs2A 151 1.13e+01 d.38.1.5 134003 2gshA 414 1.23e+01 3boxA 415 1.23e+01 2p3zA 415 1.23e+01 2uv8A 1614 1.26e+01 1mtpA 323 1.30e+01 e.1.1.1 85107 2rdyA 803 1.38e+01 2i5qA 415 1.49e+01 2iakA 224 1.54e+01 1k9aA 450 1.58e+01 b.34.2.1 72188 d.93.1.1 72189 d.144.1.7 72190 1u3eM 174 1.61e+01 d.4.1.3 107640 d.285.1.1 107641 1yxbA 98 1.80e+01 a.204.1.4 124175 1zhxA 438 1.82e+01 d.338.1.1 125112 3c4hA 357 1.86e+01 2pa9A 357 1.86e+01 1lryA 167 1.89e+01 d.167.1.1 74231 1ix1A 171 1.91e+01 d.167.1.1 90712 1zi7A 406 1.93e+01 d.338.1.1 125119 2g4cA 474 1.95e+01 c.51.1.1 134582 d.104.1.1 134583 2h6uA 119 1.96e+01 2z64C 135 2.09e+01 2nygA 273 2.09e+01 2hd3A 103 2.17e+01 2hepA 85 2.21e+01 1lqyA 184 2.28e+01 d.167.1.1 74212 1knvA 293 2.30e+01 c.52.1.7 68707 1ab2A 109 2.41e+01 d.93.1.1 40506 1twfB 1224 2.45e+01 e.29.1.1 112726 2zmdA 390 2.47e+01 2hqrA 223 2.47e+01 1p4oA 322 2.54e+01 d.144.1.7 87775 2oj9A 307 2.56e+01 d.144.1.7 139102 1jqhA 308 2.57e+01 d.144.1.7 71793 1m7nA 322 2.59e+01 d.144.1.7 78738 1k3aA 299 2.70e+01 d.144.1.7 68098 2izoA 346 2.70e+01 2zm3A 308 2.75e+01 2hr9A 180 2.90e+01 b.88.1.2 136686 1b06A 210 2.96e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 2po1A 249 2.97e+01 2yw8A 82 3.04e+01 1fp4A 492 3.10e+01 c.92.2.3 76187 1g8eA 116 3.18e+01 1g8eA a.145.1.1 60346 1m1nA 491 3.23e+01 c.92.2.3 78417 1g20A 492 3.25e+01 1qguA c.92.2.3 35613 2yqmA 89 3.26e+01 1zq1C 633 3.28e+01 a.182.1.2 125493 d.74.4.1 125494 d.128.1.5 125495 2nybA 192 3.32e+01 a.2.11.1 138804 d.44.1.1 138805 1w9hA 427 3.40e+01 c.55.3.10 120785 2b0hA 137 3.46e+01 a.24.9.2 127638 3cekA 313 3.67e+01 1bjfA 193 3.69e+01 1rec a.39.1.5 17331 2hroA 573 3.71e+01 1axkA 394 3.74e+01 1axkA b.29.1.2 24181 b.29.1.11 24315 1it2A 146 3.74e+01 a.1.1.2 66365 2hw7A 316 3.77e+01 1qezA 173 3.79e+01 2prd b.40.5.1 25410 2dskA 311 3.83e+01 2ac3A 316 3.91e+01 2zmcA 390 3.95e+01 2j3hA 345 3.96e+01