PFRMAT SS
TARGET T0481
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0481.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 141
METHOD
MODEL 1
M C 0.740
C C 0.647
Q H 0.608
S H 0.897
N H 0.902
Q H 0.883
I H 0.908
V H 0.934
S H 0.926
H H 0.902
F H 0.888
L H 0.936
S H 0.942
H H 0.949
R H 0.971
N H 0.981
V H 0.985
T H 0.990
N H 0.994
E H 0.991
L H 0.989
A H 0.981
E H 0.944
K H 0.745
I C 0.633
S C 0.570
K T 0.433
D G 0.424
H G 0.553
Y C 0.313
S C 0.331
Y C 0.411
K C 0.480
P C 0.500
A T 0.793
E T 0.873
T T 0.873
S T 0.802
M C 0.475
S C 0.677
A H 0.945
E H 0.977
E H 0.977
L H 0.989
V H 0.994
K H 0.995
H H 0.994
I H 0.995
L H 0.991
T H 0.984
S H 0.980
F H 0.981
H H 0.989
L H 0.987
F H 0.989
A H 0.985
N H 0.981
V H 0.966
I H 0.935
K H 0.873
E H 0.574
G C 0.675
N C 0.571
A C 0.447
S C 0.480
P C 0.425
F T 0.418
Q T 0.440
N T 0.446
K T 0.470
Q C 0.526
E C 0.532
E C 0.622
T C 0.801
E H 0.953
T H 0.967
D H 0.966
L H 0.971
N H 0.977
V H 0.966
L H 0.956
A H 0.949
K H 0.945
T H 0.935
Y H 0.922
T H 0.949
E H 0.976
K H 0.980
T H 0.984
V H 0.984
A H 0.977
I H 0.974
L H 0.944
E H 0.866
Q H 0.672
L C 0.574
T C 0.655
E H 0.491
E H 0.544
Q H 0.663
L H 0.601
D H 0.545
R H 0.655
E H 0.474
I H 0.523
D H 0.384
L T 0.365
T T 0.393
S T 0.504
A T 0.507
F T 0.484
G T 0.488
R T 0.395
K C 0.521
V C 0.554
T C 0.693
G H 0.960
R H 0.984
A H 0.989
L H 0.996
L H 0.999
Q H 0.999
L H 0.996
A H 0.998
M H 0.999
E H 0.998
H H 0.993
E H 0.988
I H 0.987
H H 0.971
H H 0.925
K H 0.880
G H 0.849
N H 0.985
L H 0.997
F H 0.997
V H 0.997
Y H 0.997
V H 0.996
R H 0.993
E H 0.988
M H 0.897
G C 0.931
H C 0.892
T C 0.752
E C 0.836
L C 0.771
P C 0.395
F E 0.421
Y C 0.421
Q C 0.504
Q C 0.590
R C 0.794
M C 0.968
END