# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qe9A 178 1.33e-16 2ou6A 190 2.09e-11 2f22A 144 2.37e-09 a.213.1.2 132795 2hkvA 149 4.91e-09 1rxqA 178 1.21e-08 a.213.1.1 105118 2p1aA 154 2.82e-08 2qnlA 162 1.28e-07 2yqyA 169 1.84e-07 3cexA 172 3.85e-07 2nsfA 261 1.34e-01 2arhA 203 7.92e-01 d.108.1.9 127197 2cfmA 561 1.20e+00 2nogA 173 1.22e+00 1ayl 541 1.50e+00 1ayl 2olrA 540 1.74e+00 c.91.1.1 139140 c.109.1.1 139141 1qgxA 357 1.95e+00 1qgxA e.7.1.1 42973 1ka1A 357 1.95e+00 e.7.1.1 68369 3c0bA 334 2.18e+00 2v6vA 156 2.50e+00 1it2A 146 2.77e+00 a.1.1.2 66365 3cetA 334 2.85e+00 1a41 234 3.18e+00 1a41 1a41A 234 3.18e+00 d.163.1.2 42174 1ofcX 304 3.25e+00 a.4.1.3 92826 a.4.1.13 92827 a.187.1.1 92828 2pqmA 343 3.60e+00 1mo0A 275 4.13e+00 c.1.1.1 79329 1q74A 303 4.31e+00 c.134.1.1 96019 1tg7A 971 4.55e+00 b.149.1.1 112418 b.18.1.27 112419 b.18.1.27 112420 b.71.1.5 112421 c.1.8.14 112422 2obhA 143 4.67e+00 1vjxA 157 4.85e+00 a.25.1.1 100837 1xlyA 234 4.93e+00 a.232.1.1 115457 1x0vA 354 4.95e+00 1ihgA 370 4.95e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 2a6hC 1119 5.07e+00 e.29.1.1 126264 1k1fA 72 5.19e+00 a.147.1.1 68007 2juaA 102 5.55e+00 2d2mB 142 5.58e+00 2q1zA 184 5.73e+00 2dskA 311 5.79e+00 1h97A 147 6.30e+00 1h97A a.1.1.2 60812 1xrsA 516 6.81e+00 c.1.19.4 115883 2iakA 224 6.88e+00 1g8eA 116 7.29e+00 1g8eA a.145.1.1 60346 2pa9A 357 7.64e+00 2qtsA 438 8.34e+00 3c4hA 357 8.60e+00 1ndbA 596 8.79e+00 c.43.1.3 80411 c.43.1.3 80412 2c82A 413 9.05e+00 1b8oA 284 9.10e+00 1b8oA c.56.2.1 33762 1yyaA 250 9.10e+00 1q16C 225 9.20e+00 f.21.3.1 95549 1br0A 120 9.53e+00 a.47.2.1 17772 1xo0A 324 9.73e+00 a.60.9.1 115674 d.163.1.1 115675 3cx5B 352 1.01e+01 2eqoA 140 1.02e+01 2ve3A 444 1.03e+01 1ayx 492 1.03e+01 1ayx 1qmqA 414 1.10e+01 1phd a.104.1.1 18907 3cgvA 397 1.12e+01 1p3wA 404 1.13e+01 c.67.1.3 87752 2pa6A 427 1.15e+01 1x9fB 145 1.20e+01 a.1.1.2 114984 3bneA 839 1.20e+01 2fbaA 492 1.20e+01 a.102.1.1 133239 2osxA 481 1.21e+01 2v75A 104 1.22e+01 1dz4A 414 1.23e+01 1phd a.104.1.1 18903 1jqoA 970 1.23e+01 c.1.12.3 77160 1yrcA 414 1.25e+01 a.104.1.1 123917 1js3A 486 1.30e+01 c.67.1.6 67215 2nv2A 294 1.33e+01 1kbuA 349 1.35e+01 a.60.9.1 72284 d.163.1.1 72285 2bduA 297 1.36e+01 2e1vA 454 1.38e+01 1fgqA 839 1.38e+01 1yge a.119.1.1 59826 b.12.1.1 59827 1yge 839 1.38e+01 1yge 1ygeA 839 1.38e+01 a.119.1.1 19234 b.12.1.1 23634 2qgaB 465 1.41e+01 1p1xA 260 1.42e+01 c.1.10.1 104060 1m48A 133 1.42e+01 a.26.1.2 74443 1b47A 304 1.43e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 2pidA 356 1.45e+01 1mtpA 323 1.45e+01 e.1.1.1 85107 1mqvA 125 1.46e+01 a.24.3.2 79415 2pziA 681 1.47e+01 1a2zA 220 1.47e+01 1a2zA c.56.4.1 33794 2vo1A 295 1.50e+01 1j4nA 271 1.51e+01 f.19.1.1 71510 2qjxA 127 1.53e+01 1rp3A 239 1.55e+01 a.4.13.1 97678 a.4.13.2 97679 a.177.1.1 97680 2im8A 131 1.59e+01 a.24.26.1 137506 2ps5A 374 1.60e+01 1kfrA 147 1.62e+01 a.1.1.2 72424 3crxA 343 1.65e+01 4crxA a.60.9.1 18101 d.163.1.1 42161 1qe5A 266 1.66e+01 1b8oA c.56.2.1 33784 2fjcA 156 1.69e+01 a.25.1.1 133559 1kb9B 352 1.70e+01 d.185.1.1 77313 d.185.1.1 77314 1ezvB 352 1.71e+01 1ezvB d.185.1.1 59543 d.185.1.1 59544 2yv9A 291 1.74e+01 1k8kE 178 1.76e+01 a.148.1.1 68311 1jf0A 195 1.76e+01 1ej3A a.39.1.5 62926 1zelA 298 1.81e+01 1gqiA 708 1.82e+01 c.1.8.10 76279 d.92.2.2 76280 5tmpA 213 1.84e+01 5tmpA c.37.1.1 31931 3buxB 329 1.85e+01 1nfiE 215 1.86e+01 1iknD d.211.1.1 19172 2ga1A 106 1.87e+01 a.4.1.16 134850 1g5yA 238 1.89e+01 1lbd a.123.1.1 60294 2hp7A 183 1.92e+01 1hy5A 136 1.95e+01 a.24.11.1 65955 1m15A 357 1.98e+01 a.83.1.1 78368 d.128.1.2 78369 1tqhA 247 1.99e+01 c.69.1.29 107225 2g09A 297 2.00e+01 2pmiB 293 2.04e+01 1ntyA 311 2.05e+01 a.87.1.1 103873 b.55.1.1 103874 2etxA 209 2.09e+01 2adoA 196 2.09e+01 1f44A 324 2.16e+01 a.60.9.1 64982 d.163.1.1 64983 1ez3A 127 2.18e+01 1dn1B a.47.2.1 17768 2uuuA 584 2.18e+01 4tmkA 213 2.20e+01 5tmpA c.37.1.1 31930 2qw5A 335 2.22e+01 1crxA 322 2.23e+01 4crxA a.60.9.1 18097 d.163.1.1 42157 4crxA 322 2.23e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1nxiA 132 2.26e+01 d.58.47.1 86381 2avkA 136 2.27e+01 1e5mA 416 2.37e+01 1dd8A c.95.1.1 58973 c.95.1.1 58974 1bkjA 240 2.38e+01 1bkjA d.90.1.1 40243 1efyA 350 2.39e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1n55A 251 2.40e+01 c.1.1.1 80007 3cz6A 168 2.43e+01 1o7fA 469 2.53e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1o5xA 248 2.53e+01 c.1.1.1 92528 2dr1A 386 2.54e+01 1phd 414 2.56e+01 1phd 1rovA 857 2.56e+01 a.119.1.1 97674 b.12.1.1 97675 2hvgA 482 2.57e+01 2vebA 195 2.60e+01 1va6A 518 2.62e+01 d.128.1.4 113598 1ezfA 340 2.64e+01 1ezfA a.128.1.2 19440 2yr5A 721 2.75e+01 1f52A 468 2.77e+01 1lgr d.15.9.1 37839 d.128.1.1 41169 1nksA 194 2.79e+01 1nksA c.37.1.1 31886 1huuA 90 2.81e+01 1huuA a.55.1.1 17897 1yeyA 444 2.81e+01 c.1.11.2 116664 d.54.1.1 116665 1ucpA 91 2.81e+01 a.77.1.5 99186 1mqsA 671 2.84e+01 e.25.1.1 79414 1gx3A 284 2.87e+01 d.3.1.5 70678 1aq0A 306 2.87e+01 1aq0A c.1.8.3 28842 1jcfA 344 2.89e+01 c.55.1.1 62878 c.55.1.1 62879 2hxtA 441 2.90e+01 2hneA 436 2.94e+01 2ewfA 610 2.95e+01 1unlD 208 2.99e+01 a.74.1.1 113326 1qqtA 551 2.99e+01 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 2hnhA 910 3.03e+01 1io7A 368 3.03e+01 1f4tA a.104.1.1 18971 1kczA 413 3.05e+01 c.1.11.2 68451 d.54.1.1 68452 1btmA 252 3.06e+01 1amk c.1.1.1 28513 1f4lA 551 3.07e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1ku2A 241 3.09e+01 a.4.13.1 83096 a.177.1.1 83097 2qghA 425 3.11e+01 1gk9A 260 3.14e+01 d.153.1.2 65246 1w5rA 278 3.14e+01 d.3.1.5 120643 1pzrA 60 3.15e+01 a.38.2.1 95468 1d7kA 421 3.23e+01 7odcA b.49.2.3 26486 c.1.6.1 28648 2cblA 305 3.25e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1iatA 557 3.26e+01 1dqrA c.80.1.2 62123 1f2eA 201 3.27e+01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1uozA 315 3.28e+01 c.6.1.1 113354 1w5cF 44 3.34e+01 i.5.1.1 114220 1jfgA 374 3.37e+01 a.128.1.5 66636 1r2rA 248 3.39e+01 c.1.1.1 96875 1a0rB 340 3.39e+01 1tbgA b.69.4.1 27658 1mo9A 523 3.44e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1cqxA 403 3.44e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 2ahmE 203 3.46e+01 d.302.1.1 126764 1vdkA 466 3.46e+01 a.127.1.1 100561 1y5iC 225 3.49e+01 2r9iA 141 3.51e+01 1kiyA 374 3.59e+01 a.128.1.5 72555 1gm7A 209 3.60e+01 d.153.1.2 65302 1dn1B 267 3.60e+01 1dn1B a.47.2.1 17771 1h4lD 147 3.63e+01 a.74.1.1 70873 1aq6A 253 3.63e+01 1qq5A c.108.1.1 43331 2gykB 134 3.64e+01 d.4.1.1 135857 2gruA 368 3.65e+01 1ub3A 220 3.67e+01 c.1.10.1 88395 3ccgA 190 3.68e+01 1foeA 377 3.73e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 3crvA 551 3.73e+01 2yzrA 330 3.76e+01 1x42A 232 3.77e+01 c.108.1.1 121677 2nv1A 305 3.79e+01 2iqcA 210 3.79e+01 2dp3A 257 3.79e+01 1mkiA 330 3.82e+01 e.3.1.2 84994 2o2cA 613 3.83e+01 1aw2A 256 3.84e+01 1amk c.1.1.1 28523 1v64A 108 3.92e+01 a.21.1.1 108392 7odcA 424 3.93e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1r5lA 262 3.99e+01 a.5.3.1 97099 c.13.1.1 97100