%  SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  T0481.t2k.100-30-str   Host: moai02.kilokluster.ucsc.edu    Tue Jul  1 09:58:47 2008
%  farmer                 Dir:  /projects/compbiotmp/target02-query/target02-query-1214930772-8813
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.strs
%

MODLIBMOD T0481.t2k.100-30-str T0481.t2k.100-30-str model number 1
% Calibration data for 18235 database sequences
% 4545 of 18235 scores > calibrate_threshold (0) used.
trackmod T0481.t2k.w0.5.mod,T0481.t2k.str.mod
trackcoeff 1.0,0.3
alphabet protein,STR
lambda 2.138960
tau 0.687309
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD