# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qe9A 178 8.72e-15 2ou6A 190 1.44e-10 2f22A 144 8.61e-09 a.213.1.2 132795 2hkvA 149 1.60e-08 1rxqA 178 2.93e-08 a.213.1.1 105118 2p1aA 154 3.90e-08 2qnlA 162 8.32e-08 3cexA 172 2.48e-07 2yqyA 169 8.47e-07 2nsfA 261 1.29e-01 3c4hA 357 8.09e-01 2arhA 203 8.88e-01 d.108.1.9 127197 2pa9A 357 1.32e+00 2dskA 311 1.62e+00 2cfmA 561 1.69e+00 1tg7A 971 2.29e+00 b.149.1.1 112418 b.18.1.27 112419 b.18.1.27 112420 b.71.1.5 112421 c.1.8.14 112422 2q1zA 184 2.52e+00 2olrA 540 2.56e+00 c.91.1.1 139140 c.109.1.1 139141 1k8kE 178 2.91e+00 a.148.1.1 68311 3c0bA 334 3.07e+00 1ezfA 340 3.62e+00 1ezfA a.128.1.2 19440 3cetA 334 3.63e+00 1vjxA 157 3.83e+00 a.25.1.1 100837 2v75A 104 4.26e+00 1k1fA 72 4.42e+00 a.147.1.1 68007 2nogA 173 4.48e+00 1js3A 486 4.51e+00 c.67.1.6 67215 3cx5B 352 4.52e+00 1f44A 324 5.42e+00 a.60.9.1 64982 d.163.1.1 64983 1qgxA 357 5.94e+00 1qgxA e.7.1.1 42973 1ihgA 370 6.05e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1mo0A 275 6.10e+00 c.1.1.1 79329 1gqiA 708 6.22e+00 c.1.8.10 76279 d.92.2.2 76280 2yv9A 291 6.38e+00 1ka1A 357 6.44e+00 e.7.1.1 68369 2juaA 102 6.45e+00 1it2A 146 6.48e+00 a.1.1.2 66365 1ayl 541 6.58e+00 1ayl 2pqmA 343 6.68e+00 3crxA 343 6.81e+00 4crxA a.60.9.1 18101 d.163.1.1 42161 1rp3A 239 6.86e+00 a.4.13.1 97678 a.4.13.2 97679 a.177.1.1 97680 1yyaA 250 6.90e+00 1kbuA 349 7.01e+00 a.60.9.1 72284 d.163.1.1 72285 1jf0A 195 7.04e+00 1ej3A a.39.1.5 62926 4crxA 322 7.14e+00 4crxA a.60.9.1 18095 d.163.1.1 42155 2c82A 413 7.32e+00 1crxA 322 7.37e+00 4crxA a.60.9.1 18097 d.163.1.1 42157 1o7fA 469 7.58e+00 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1ezvB 352 7.77e+00 1ezvB d.185.1.1 59543 d.185.1.1 59544 1foeA 377 8.22e+00 1foeA a.87.1.1 18517 b.55.1.1 26969 1b8oA 284 8.40e+00 1b8oA c.56.2.1 33762 2bg9E 370 8.56e+00 1dz4A 414 8.61e+00 1phd a.104.1.1 18903 1g5yA 238 8.79e+00 1lbd a.123.1.1 60294 1x9fB 145 9.23e+00 a.1.1.2 114984 2pa6A 427 9.24e+00 1p68A 102 9.29e+00 k.8.1.1 94158 1xo0A 324 9.44e+00 a.60.9.1 115674 d.163.1.1 115675 2iakA 224 9.45e+00 1qmqA 414 9.72e+00 1phd a.104.1.1 18907 1f4tA 368 9.82e+00 1f4tA a.104.1.1 18973 1phd 414 9.95e+00 1phd 1h97A 147 1.02e+01 1h97A a.1.1.2 60812 1br0A 120 1.02e+01 a.47.2.1 17772 1q16C 225 1.03e+01 f.21.3.1 95549 1kb9B 352 1.05e+01 d.185.1.1 77313 d.185.1.1 77314 1yrcA 414 1.05e+01 a.104.1.1 123917 1b47A 304 1.07e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 2cblA 305 1.11e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 2zfoB 142 1.11e+01 2qklB 95 1.13e+01 1ndbA 596 1.22e+01 c.43.1.3 80411 c.43.1.3 80412 1a41 234 1.22e+01 1a41 1a41A 234 1.22e+01 d.163.1.2 42174 2b0tA 738 1.23e+01 3ccyA 203 1.23e+01 1ucpA 91 1.26e+01 a.77.1.5 99186 2ga1A 106 1.30e+01 a.4.1.16 134850 1mqvA 125 1.31e+01 a.24.3.2 79415 1mo9A 523 1.33e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 3cgvA 397 1.34e+01 2v6vA 156 1.35e+01 2qgaB 465 1.37e+01 3buxB 329 1.40e+01 1a7vA 125 1.51e+01 1cpq a.24.3.2 16562 1q74A 303 1.51e+01 c.134.1.1 96019 1r6uA 437 1.57e+01 c.26.1.1 97163 2hxtA 441 1.60e+01 2vo1A 295 1.68e+01 1m48A 133 1.69e+01 a.26.1.2 74443 1nksA 194 1.69e+01 1nksA c.37.1.1 31886 1r0kA 388 1.69e+01 a.69.3.1 104723 c.2.1.3 104724 d.81.1.3 104725 2e1vA 454 1.70e+01 1btmA 252 1.72e+01 1amk c.1.1.1 28513 2qtsA 438 1.74e+01 1ofcX 304 1.74e+01 a.4.1.3 92826 a.4.1.13 92827 a.187.1.1 92828 2pi1A 334 1.76e+01 2qibA 231 1.77e+01 1j9bA 141 1.78e+01 c.47.1.12 66459 1fnmA 691 1.79e+01 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1hy5A 136 1.79e+01 a.24.11.1 65955 2r9iA 141 1.80e+01 2obhA 143 1.81e+01 1s3cA 141 1.82e+01 1io7A 368 1.91e+01 1f4tA a.104.1.1 18971 3crvA 551 1.91e+01 2qw5A 335 1.92e+01 1g8eA 116 1.92e+01 1g8eA a.145.1.1 60346 1aj2 282 1.92e+01 1aj2 2ve3A 444 1.94e+01 2va8A 715 1.96e+01 1yeyA 444 1.97e+01 c.1.11.2 116664 d.54.1.1 116665 2pidA 356 1.99e+01 3bneA 839 2.00e+01 1z8uA 102 2.00e+01 a.7.11.1 124724 2hneA 436 2.01e+01 2hp7A 183 2.02e+01 1y5iC 225 2.03e+01 1tpfA 250 2.03e+01 1amk c.1.1.1 28467 1yvhA 329 2.03e+01 a.39.1.7 124096 a.48.1.1 124097 d.93.1.1 124098 1j30A 144 2.04e+01 a.25.1.1 90806 2afdA 88 2.05e+01 1o5xA 248 2.07e+01 c.1.1.1 92528 1h4lD 147 2.07e+01 a.74.1.1 70873 1unlD 208 2.09e+01 a.74.1.1 113326 3ce7A 107 2.10e+01 1fgqA 839 2.11e+01 1yge a.119.1.1 59826 b.12.1.1 59827 2j07A 420 2.12e+01 a.99.1.1 137891 c.28.1.1 137892 1rovA 857 2.14e+01 a.119.1.1 97674 b.12.1.1 97675 1ygeA 839 2.18e+01 a.119.1.1 19234 b.12.1.1 23634 1yge 839 2.19e+01 1yge 1f46A 140 2.22e+01 1f46A d.129.4.1 59643 2d2mB 142 2.23e+01 2in1A 175 2.25e+01 d.20.1.4 137521 1bolA 222 2.26e+01 1bolA d.124.1.1 41120 1n0uA 842 2.26e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1dn1B 267 2.28e+01 1dn1B a.47.2.1 17771 2qmqA 286 2.29e+01 1r2rA 248 2.30e+01 c.1.1.1 96875 1huuA 90 2.30e+01 1huuA a.55.1.1 17897 1i6pA 220 2.31e+01 1ddzA c.53.2.1 61848 1jqoA 970 2.36e+01 c.1.12.3 77160 2zbxA 412 2.37e+01 1nv8A 284 2.39e+01 c.66.1.30 86224 1b9bA 255 2.40e+01 1amk c.1.1.1 28531 1y6nL 145 2.44e+01 1ljrA 244 2.44e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1cnt1 187 2.44e+01 1cnt3 2fjcA 156 2.45e+01 a.25.1.1 133559 3b82A 842 2.48e+01 2iqcA 210 2.49e+01 2avkA 136 2.55e+01 2a6hC 1119 2.56e+01 e.29.1.1 126264 2fafA 608 2.64e+01 1ud0A 113 2.64e+01 a.8.4.1 99198 2p1tA 240 2.66e+01 2hvgA 482 2.70e+01 1nxiA 132 2.71e+01 d.58.47.1 86381 1ayx 492 2.75e+01 1ayx 2h27A 73 2.75e+01 a.4.13.2 135993 2im8A 131 2.76e+01 a.24.26.1 137506 3bhcA 249 2.76e+01 1o08A 221 2.77e+01 c.108.1.6 86525 2oieA 111 2.82e+01 a.204.1.2 139092 1s0pA 176 2.83e+01 a.192.1.1 98300 3c5iA 369 2.84e+01 1zelA 298 2.85e+01 1f47B 144 2.88e+01 1f46A d.129.4.1 59645 2np9A 440 2.90e+01 1i45A 248 2.91e+01 1amk c.1.1.1 61665 1knvA 293 2.99e+01 c.52.1.7 68707 2qsfA 533 3.04e+01 1qqtA 551 3.04e+01 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 1t7lA 766 3.07e+01 1buqA 125 3.08e+01 1opy d.17.4.3 38111 2vebA 195 3.09e+01 3crjA 199 3.10e+01 1pzrA 60 3.11e+01 a.38.2.1 95468 2jepA 395 3.12e+01 2c2aA 258 3.12e+01 a.30.2.1 129662 d.122.1.3 129663 1ovlA 271 3.13e+01 a.123.1.1 87455 2choA 716 3.19e+01 a.246.1.1 130479 c.1.8.10 130480 d.92.2.3 130481 3cl6A 308 3.19e+01 2d5xB 146 3.22e+01 a.1.1.2 131283 1ez3A 127 3.23e+01 1dn1B a.47.2.1 17768 2gsqA 202 3.24e+01 a.45.1.1 17715 c.47.1.5 33009 1amk 251 3.26e+01 1amk 1m15A 357 3.29e+01 a.83.1.1 78368 d.128.1.2 78369 1fr2B 134 3.30e+01 d.4.1.1 83257 1qb2A 109 3.30e+01 1qb2A a.36.1.1 17125 1xlyA 234 3.33e+01 a.232.1.1 115457 2qf2A 624 3.35e+01 1v64A 108 3.39e+01 a.21.1.1 108392 1ezwA 349 3.40e+01 1ezwA c.1.16.3 29558 2p65A 187 3.41e+01 1e9gA 286 3.41e+01 1wgjA b.40.5.1 59393 1cpq 129 3.42e+01 1cpq 1cpqA 129 3.42e+01 a.24.3.2 16556 2q4kA 251 3.43e+01 d.86.1.2 139864 1gm7A 209 3.45e+01 d.153.1.2 65302 2qzcA 214 3.46e+01 2ip1A 432 3.47e+01 2yzrA 330 3.47e+01 7timA 247 3.52e+01 1amk c.1.1.1 28457 2drwA 363 3.52e+01 e.3.1.1 131674 2pziA 681 3.53e+01 1x0vA 354 3.53e+01 2hm2Q 89 3.54e+01 1a2zA 220 3.56e+01 1a2zA c.56.4.1 33794 2z6oA 172 3.59e+01 1n55A 251 3.60e+01 c.1.1.1 80007 1z8oA 404 3.61e+01 a.104.1.1 124722 1ryp1 222 3.69e+01 1ryp1 1ayaA 101 3.70e+01 1qadA d.93.1.1 40460 2fbaA 492 3.71e+01 a.102.1.1 133239 2bcjB 340 3.73e+01 b.69.4.1 128289 2yxnA 322 3.76e+01 2c3nA 247 3.76e+01 1w9cA 321 3.77e+01 a.118.1.19 114410 1gk9A 260 3.78e+01 d.153.1.2 65246 1neyA 247 3.80e+01 c.1.1.1 80449 1a0fA 201 3.81e+01 1a0fA a.45.1.1 17737 c.47.1.5 33031 1zrrA 179 3.82e+01 b.82.1.6 125555 2rfrA 155 3.84e+01 1zr6A 503 3.87e+01 2j6lA 500 3.88e+01 1tqhA 247 3.88e+01 c.69.1.29 107225 2axtB 510 3.89e+01 1yhuB 144 3.89e+01 1w5cF 44 3.90e+01 i.5.1.1 114220 1j1nA 492 3.92e+01 c.94.1.1 83978 2e50A 225 3.95e+01 1qe5A 266 3.96e+01 1b8oA c.56.2.1 33784 1t2bA 397 3.96e+01