# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qe9A 178 1.54e-15 2ou6A 190 2.44e-11 2f22A 144 2.94e-09 a.213.1.2 132795 2hkvA 149 5.05e-09 1rxqA 178 1.40e-08 a.213.1.1 105118 2p1aA 154 2.51e-08 2qnlA 162 5.39e-08 3cexA 172 1.30e-07 2yqyA 169 7.43e-07 2nsfA 261 1.56e-01 2arhA 203 4.41e-01 d.108.1.9 127197 3c4hA 357 6.72e-01 2cfmA 561 8.45e-01 1tg7A 971 8.85e-01 b.149.1.1 112418 b.18.1.27 112419 b.18.1.27 112420 b.71.1.5 112421 c.1.8.14 112422 2pa9A 357 9.90e-01 2dskA 311 1.17e+00 1vjxA 157 1.46e+00 a.25.1.1 100837 3c0bA 334 1.47e+00 2q1zA 184 1.50e+00 2olrA 540 1.52e+00 c.91.1.1 139140 c.109.1.1 139141 3cetA 334 1.61e+00 1qgxA 357 1.78e+00 1qgxA e.7.1.1 42973 3cx5B 352 1.95e+00 2v75A 104 2.16e+00 2pqmA 343 2.17e+00 1ka1A 357 2.20e+00 e.7.1.1 68369 1it2A 146 2.53e+00 a.1.1.2 66365 1ezfA 340 2.55e+00 1ezfA a.128.1.2 19440 2nogA 173 2.59e+00 1ihgA 370 2.98e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1rp3A 239 3.29e+00 a.4.13.1 97678 a.4.13.2 97679 a.177.1.1 97680 1ezvB 352 3.40e+00 1ezvB d.185.1.1 59543 d.185.1.1 59544 1k1fA 72 3.60e+00 a.147.1.1 68007 2zfoB 142 4.00e+00 1k8kE 178 4.16e+00 a.148.1.1 68311 1gqiA 708 4.19e+00 c.1.8.10 76279 d.92.2.2 76280 1h97A 147 4.22e+00 1h97A a.1.1.2 60812 1q74A 303 4.27e+00 c.134.1.1 96019 1dz4A 414 4.33e+00 1phd a.104.1.1 18903 1ayl 541 4.66e+00 1ayl 2qgaB 465 4.69e+00 1f44A 324 4.78e+00 a.60.9.1 64982 d.163.1.1 64983 1kb9B 352 4.80e+00 d.185.1.1 77313 d.185.1.1 77314 1b47A 304 4.89e+00 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1phd 414 4.98e+00 1phd 2c82A 413 5.06e+00 1qmqA 414 5.08e+00 1phd a.104.1.1 18907 1yrcA 414 5.21e+00 a.104.1.1 123917 1br0A 120 5.22e+00 a.47.2.1 17772 1foeA 377 5.49e+00 1foeA a.87.1.1 18517 b.55.1.1 26969 2vo1A 295 5.54e+00 1js3A 486 5.56e+00 c.67.1.6 67215 1hy5A 136 5.59e+00 a.24.11.1 65955 1s3cA 141 5.74e+00 1mo9A 523 5.93e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1ovlA 271 6.01e+00 a.123.1.1 87455 1j9bA 141 6.11e+00 c.47.1.12 66459 2juaA 102 6.15e+00 1jf0A 195 6.18e+00 1ej3A a.39.1.5 62926 1x9fB 145 6.25e+00 a.1.1.2 114984 2j07A 420 6.30e+00 a.99.1.1 137891 c.28.1.1 137892 1b8oA 284 6.34e+00 1b8oA c.56.2.1 33762 1o7fA 469 6.36e+00 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 2cblA 305 6.37e+00 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1mqvA 125 6.42e+00 a.24.3.2 79415 1g5yA 238 6.52e+00 1lbd a.123.1.1 60294 1mo0A 275 6.52e+00 c.1.1.1 79329 3buxB 329 6.83e+00 1crxA 322 7.12e+00 4crxA a.60.9.1 18097 d.163.1.1 42157 2pa6A 427 7.57e+00 1ndbA 596 7.58e+00 c.43.1.3 80411 c.43.1.3 80412 1fnmA 691 7.68e+00 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1f4tA 368 7.73e+00 1f4tA a.104.1.1 18973 1xo0A 324 8.49e+00 a.60.9.1 115674 d.163.1.1 115675 3crxA 343 8.49e+00 4crxA a.60.9.1 18101 d.163.1.1 42161 2v6vA 156 8.58e+00 2iakA 224 8.91e+00 2qtsA 438 9.02e+00 1q16C 225 9.13e+00 f.21.3.1 95549 1a41 234 9.30e+00 1a41 1a41A 234 9.30e+00 d.163.1.2 42174 1btmA 252 9.32e+00 1amk c.1.1.1 28513 2qklB 95 9.41e+00 4crxA 322 9.48e+00 4crxA a.60.9.1 18095 d.163.1.1 42155 3cgvA 397 9.49e+00 2qw5A 335 9.57e+00 1p68A 102 9.64e+00 k.8.1.1 94158 2ga1A 106 9.76e+00 a.4.1.16 134850 1yyaA 250 9.86e+00 2bg9E 370 1.00e+01 2d2mB 142 1.01e+01 1kbuA 349 1.03e+01 a.60.9.1 72284 d.163.1.1 72285 1ucpA 91 1.04e+01 a.77.1.5 99186 2hvgA 482 1.04e+01 1jqoA 970 1.11e+01 c.1.12.3 77160 2b0tA 738 1.11e+01 3ccyA 203 1.11e+01 2gruA 368 1.18e+01 1i6pA 220 1.18e+01 1ddzA c.53.2.1 61848 1m15A 357 1.18e+01 a.83.1.1 78368 d.128.1.2 78369 2a6hC 1119 1.18e+01 e.29.1.1 126264 2jepA 395 1.20e+01 2obhA 143 1.21e+01 1yge 839 1.24e+01 1yge 1ygeA 839 1.24e+01 a.119.1.1 19234 b.12.1.1 23634 1o08A 221 1.25e+01 c.108.1.6 86525 1a7vA 125 1.27e+01 1cpq a.24.3.2 16562 3bneA 839 1.28e+01 2pidA 356 1.30e+01 1vbuA 328 1.30e+01 c.1.8.3 119963 1m48A 133 1.30e+01 a.26.1.2 74443 2hxtA 441 1.31e+01 3crvA 551 1.31e+01 1xrsA 516 1.32e+01 c.1.19.4 115883 2pi1A 334 1.33e+01 1xlyA 234 1.33e+01 a.232.1.1 115457 3ce7A 107 1.34e+01 3bhcA 249 1.35e+01 1r0kA 388 1.35e+01 a.69.3.1 104723 c.2.1.3 104724 d.81.1.3 104725 2ve3A 444 1.36e+01 2qmqA 286 1.36e+01 1h4lD 147 1.36e+01 a.74.1.1 70873 2afdA 88 1.37e+01 1fgqA 839 1.37e+01 1yge a.119.1.1 59826 b.12.1.1 59827 1nksA 194 1.38e+01 1nksA c.37.1.1 31886 1p1xA 260 1.39e+01 c.1.10.1 104060 2qibA 231 1.39e+01 2q4kA 251 1.41e+01 d.86.1.2 139864 2q8nA 460 1.42e+01 1ofcX 304 1.42e+01 a.4.1.3 92826 a.4.1.13 92827 a.187.1.1 92828 2hneA 436 1.43e+01 1buqA 125 1.43e+01 1opy d.17.4.3 38111 1y6nL 145 1.44e+01 1x0vA 354 1.44e+01 2yv9A 291 1.45e+01 1io7A 368 1.46e+01 1f4tA a.104.1.1 18971 1f46A 140 1.47e+01 1f46A d.129.4.1 59643 1bhdA 118 1.47e+01 1bkrA a.40.1.1 17398 2adoA 196 1.48e+01 1unlD 208 1.50e+01 a.74.1.1 113326 1yvhA 329 1.51e+01 a.39.1.7 124096 a.48.1.1 124097 d.93.1.1 124098 1yeyA 444 1.51e+01 c.1.11.2 116664 d.54.1.1 116665 1g8eA 116 1.52e+01 1g8eA a.145.1.1 60346 1e9gA 286 1.54e+01 1wgjA b.40.5.1 59393 1r6uA 437 1.56e+01 c.26.1.1 97163 2hp7A 183 1.57e+01 1t7lA 766 1.58e+01 1rovA 857 1.60e+01 a.119.1.1 97674 b.12.1.1 97675 1nv8A 284 1.60e+01 c.66.1.30 86224 1amk 251 1.62e+01 1amk 1z8uA 102 1.64e+01 a.7.11.1 124724 1pzrA 60 1.64e+01 a.38.2.1 95468 1j30A 144 1.65e+01 a.25.1.1 90806 1huuA 90 1.66e+01 1huuA a.55.1.1 17897 2va8A 715 1.66e+01 2nu8B 388 1.66e+01 1tpfA 250 1.67e+01 1amk c.1.1.1 28467 2yr5A 721 1.67e+01 3crjA 199 1.68e+01 1t2bA 397 1.68e+01 1efyA 350 1.69e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1n55A 251 1.71e+01 c.1.1.1 80007 1fr2B 134 1.71e+01 d.4.1.1 83257 1ayx 492 1.71e+01 1ayx 2im8A 131 1.75e+01 a.24.26.1 137506 2r9iA 141 1.76e+01 1qqtA 551 1.76e+01 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 1ayaA 101 1.77e+01 1qadA d.93.1.1 40460 1a0fA 201 1.80e+01 1a0fA a.45.1.1 17737 c.47.1.5 33031 2yzrA 330 1.82e+01 3cerA 343 1.84e+01 2pziA 681 1.85e+01 2gouA 365 1.85e+01 3ck6A 252 1.87e+01 2fbaA 492 1.87e+01 a.102.1.1 133239 1o5xA 248 1.87e+01 c.1.1.1 92528 1iatA 557 1.88e+01 1dqrA c.80.1.2 62123 1u0fA 564 1.89e+01 c.80.1.2 112912 1ezwA 349 1.90e+01 1ezwA c.1.16.3 29558 1w9cA 321 1.94e+01 a.118.1.19 114410 1j4nA 271 1.96e+01 f.19.1.1 71510 2avkA 136 1.97e+01 1b9bA 255 1.98e+01 1amk c.1.1.1 28531 1y5iC 225 2.00e+01 1tqhA 247 2.01e+01 c.69.1.29 107225 1ki9A 192 2.01e+01 c.37.1.1 84404 2e1vA 454 2.05e+01 1au1A 166 2.07e+01 1ifa a.26.1.3 16889 2fafA 608 2.09e+01 3c5iA 369 2.10e+01 1nxiA 132 2.10e+01 d.58.47.1 86381 2etxA 209 2.11e+01 1vjzA 341 2.13e+01 c.1.8.3 100838 1f47B 144 2.13e+01 1f46A d.129.4.1 59645 2cb8A 87 2.13e+01 2vlqB 134 2.14e+01 2qghA 425 2.14e+01 1qb2A 109 2.16e+01 1qb2A a.36.1.1 17125 2in1A 175 2.18e+01 d.20.1.4 137521 1gm7A 209 2.21e+01 d.153.1.2 65302 2fjcA 156 2.22e+01 a.25.1.1 133559 1wovA 250 2.23e+01 a.132.1.1 121124 2j6vA 301 2.23e+01 1r2rA 248 2.24e+01 c.1.1.1 96875 1eudB 396 2.25e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 2bcjB 340 2.27e+01 b.69.4.1 128289 1kaeA 434 2.29e+01 c.82.1.2 72247 1lrv 244 2.29e+01 1lrv 1lrvA 244 2.29e+01 a.118.1.5 19146 1a2zA 220 2.30e+01 1a2zA c.56.4.1 33794 1qgrA 876 2.32e+01 1qgrA a.118.1.1 19119 2pmiB 293 2.33e+01 1e5mA 416 2.35e+01 1dd8A c.95.1.1 58973 c.95.1.1 58974 1gk9A 260 2.36e+01 d.153.1.2 65246 1nm8A 616 2.39e+01 c.43.1.3 85872 c.43.1.3 85873 1s0pA 176 2.39e+01 a.192.1.1 98300 1n0uA 842 2.39e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1j7iA 264 2.40e+01 1j7iA d.144.1.6 62694 1ffyA 917 2.40e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 2.40e+01 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 1hh1A 143 2.41e+01 1gefA c.52.1.18 61036 1kczA 413 2.41e+01 c.1.11.2 68451 d.54.1.1 68452 1a0p 290 2.42e+01 1a0p 1a0pA 290 2.42e+01 a.60.9.1 18105 d.163.1.1 42165 1bouB 302 2.42e+01 1bouB c.56.6.1 33859 3cc1A 433 2.43e+01 1ztpA 251 2.43e+01 d.86.1.2 125649 2axtB 510 2.45e+01 2p1tA 240 2.50e+01 2drwA 363 2.50e+01 e.3.1.1 131674 2eqoA 140 2.51e+01 1jcjA 260 2.53e+01 c.1.10.1 66499 2dx6A 159 2.55e+01 2yxnA 322 2.56e+01 3bqyA 209 2.56e+01 1bolA 222 2.57e+01 1bolA d.124.1.1 41120 2o2cA 613 2.59e+01 1p3wA 404 2.64e+01 c.67.1.3 87752 1kb0A 677 2.65e+01 a.3.1.6 68378 b.70.1.1 68379 1fkx 349 2.65e+01 1a4mA 3b82A 842 2.65e+01 1dn1B 267 2.66e+01 1dn1B a.47.2.1 17771 1ez3A 127 2.67e+01 1dn1B a.47.2.1 17768 1ub3A 220 2.68e+01 c.1.10.1 88395 2fp4B 395 2.69e+01 c.23.4.1 133897 d.142.1.4 133898 2qf2A 624 2.70e+01 2ip1A 432 2.70e+01 2acvA 463 2.72e+01 1vqrA 297 2.73e+01 a.211.1.3 114015 1a4mA 349 2.74e+01 1a4mA c.1.9.1 29014 2f3nA 76 2.75e+01 a.60.1.2 132885 2pfyA 301 2.77e+01 3cl6A 308 2.77e+01 1pv1A 299 2.77e+01 c.69.1.34 111639 1yadA 221 2.80e+01 2ewfA 610 2.82e+01 1wq3A 322 2.83e+01 1r1dA 247 2.84e+01 c.69.1.29 96813 1ryp1 222 2.86e+01 1ryp1 1w5cF 44 2.87e+01 i.5.1.1 114220 1x6fA 88 2.87e+01 g.37.1.1 121742 2p0lA 288 2.89e+01 2h27A 73 2.92e+01 a.4.13.2 135993 1aq0A 306 2.92e+01 1aq0A c.1.8.3 28842 2qsfA 533 2.92e+01 2p57A 144 2.93e+01 1v64A 108 2.94e+01 a.21.1.1 108392 2pyxA 526 2.94e+01 2oixA 186 2.96e+01 2cmwA 310 2.97e+01 2au5A 139 2.98e+01 a.244.1.1 127322 1x42A 232 3.02e+01 c.108.1.1 121677 1zrrA 179 3.03e+01 b.82.1.6 125555 2fgoA 82 3.05e+01 1zejA 293 3.06e+01 2fm9A 215 3.07e+01 a.257.1.1 133770 2gwmA 200 3.09e+01 2idgA 175 3.12e+01 1yz1A 174 3.17e+01 b.88.1.2 124264 1b06A 210 3.18e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 1qv1A 195 3.21e+01 a.39.1.5 96347 1jf3A 147 3.22e+01 a.1.1.2 71642 1emvB 134 3.24e+01 1bxiB d.4.1.1 37135 1yhuB 144 3.27e+01 2axtF 45 3.28e+01 1r5lA 262 3.29e+01 a.5.3.1 97099 c.13.1.1 97100 1f7wA 144 3.34e+01 1f46A d.129.4.1 59679 2d5xB 146 3.36e+01 a.1.1.2 131283 2de0X 526 3.39e+01 2p65A 187 3.39e+01 2iqcA 210 3.39e+01 2bh4X 134 3.41e+01 2ddxA 333 3.41e+01 1qe5A 266 3.42e+01 1b8oA c.56.2.1 33784 1knvA 293 3.43e+01 c.52.1.7 68707 1cnt1 187 3.44e+01 1cnt3 2ew8A 249 3.51e+01 c.2.1.2 132447 2ahmE 203 3.54e+01 d.302.1.1 126764 1w85A 368 3.55e+01 c.36.1.11 114335 1ud0A 113 3.56e+01 a.8.4.1 99198 2j0fA 482 3.56e+01 1ir3A 306 3.58e+01 1fmk d.144.1.7 41702 7taa 478 3.58e+01 7taa 1n1jA 93 3.58e+01 a.22.1.3 79813 1kv5A 250 3.59e+01 c.1.1.1 73052 2osxA 481 3.60e+01 1a0aA 63 3.61e+01 1a0aA a.38.1.1 17138 2akzA 439 3.61e+01 c.1.11.1 126944 d.54.1.1 126945 2fueA 262 3.63e+01 c.108.1.10 134119 1lbd 282 3.65e+01 1lbd 1jf2A 195 3.66e+01 1ej3A a.39.1.5 62930 2cwoA 197 3.67e+01 1om2A 95 3.67e+01 1om2A a.23.4.1 16520 1ithA 141 3.69e+01 1ithA a.1.1.2 15623 2czlA 272 3.69e+01 c.94.1.1 131055 1ijyA 130 3.70e+01 1ijxA a.141.1.1 62517 1ee8A 266 3.72e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 2p64A 52 3.73e+01 1bkdS 439 3.73e+01 1bkdS a.117.1.1 19111 2nacA 393 3.73e+01 2nadA c.2.1.4 30088 c.23.12.1 31348 3cklA 298 3.75e+01 8prkA 287 3.77e+01 1wgjA b.40.5.1 25395 1ks8A 433 3.77e+01 a.102.1.2 77519 2hekA 371 3.84e+01 a.211.1.1 136354 2qq9A 226 3.87e+01 2qhsA 237 3.89e+01 2axtE 84 3.89e+01 1kxu 333 3.89e+01 1jkw 1kxuA 333 3.89e+01 a.74.1.1 18358 a.74.1.1 18359 1nfp 228 3.91e+01 1nfp 1nfpA 228 3.91e+01 c.1.16.2 29555 1mfqC 129 3.92e+01 a.36.1.1 79046 2nz8B 313 3.95e+01 a.87.1.1 138838 b.55.1.1 138839 1jcfA 344 3.95e+01 c.55.1.1 62878 c.55.1.1 62879 1g0uL 241 3.96e+01 d.153.1.4 41894 1uouA 474 3.97e+01 a.46.2.1 99706 c.27.1.1 99707 d.41.3.1 99708 1zelA 298 3.99e+01