# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.3846 g.41.8.1 45315 3cngA 189 0.4596 2qjtA 352 0.5769 1jj2Y 73 0.7266 g.41.8.1 63110 1jj2Z 56 0.8808 g.41.8.2 63111 1rlyA 60 1.087 g.41.3.1 104988 2qjoA 341 1.785 2apoB 60 1.899 g.41.16.1 127135 2ausB 60 2.089 1ltlA 279 2.335 b.40.4.11 84701 1dl6A 58 2.484 g.41.3.1 45207 1n0zA 45 2.705 g.41.11.1 85247 1m2kA 249 3.384 c.31.1.5 84754 1vk6A 269 3.509 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2gnrA 145 3.516 1yc5A 246 4.288 c.31.1.5 122910 2rfkB 53 4.325 1gaxA 862 4.794 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1ma3A 253 4.897 c.31.1.5 78883 1wdxA 69 6.319 2j015 60 6.798 2e72A 49 8.116 1b71A 191 8.237 a.25.1.1,g.41.5.1 16647,45246 2riqA 160 10.50 1iciA 256 10.83 c.31.1.5 62266 2fmlA 273 10.93 a.4.5.68,d.113.1.6 133778,133779 1q1aA 289 11.60 c.31.1.5 95561 1ptqA 50 11.65 g.49.1.1 45349 2occF 98 11.96 g.41.5.3 45256 2cttA 104 12.77 1mfwA 107 14.51 d.15.11.1 84940 1twfI 122 15.12 g.41.3.1,g.41.3.1 112733,112734 4gatA 66 15.64 g.39.1.1 45100 2csbA 519 16.52 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1qw2A 102 17.72 d.249.1.1 96456 1beiA 35 18.04 g.19.1.1 44877 1v54F 98 19.02 g.41.5.3 100327 2b4yA 271 20.34 c.31.1.5 127868 1x6mA 196 23.84 b.88.1.4 114920 1iroA 54 24.08 g.41.5.1 45223 2jmoA 80 24.39 1j8eA 44 25.97 g.12.1.1 66437 2pvxA 54 27.25 1wyxA 69 28.32 1ptq 50 28.75 1hdlA 55 28.90 g.68.1.2 65808 1s72Z 73 30.10 g.41.8.1 105345 1ajj 37 30.28 1rb9A 52 30.52 g.41.5.1 45214 1g61A 228 31.85 d.126.1.1 41126 2pveA 54 32.00 1ym0B 27 32.61 2eo0A 147 33.14 1jocA 125 33.73 g.50.1.1,h.1.21.1 66990,66991 1dgsA 667 33.74 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 2dsxA 52 33.78 g.41.5.1 131699 2ctdA 96 34.08 g.37.1.1,g.37.1.1 130792,130793 1twfL 70 34.68 g.41.9.2 112737 1xpaA 122 34.80 a.6.1.2,g.39.1.5 16308,45151 2i5oA 39 36.65 1wqkA 42 37.97 1ltsA 185 38.33 d.166.1.1 42229 1s5pA 235 39.33 c.31.1.5 98569 1b2jA 54 40.12 g.41.5.1 45231 1b2oA 54 40.42 g.41.5.1 45233 1dx8A 70 41.16 g.41.5.1 45243 2hjhA 354 41.20 2nutA 769 41.73 1cr8A 42 42.61 g.12.1.1 44613 1b13A 54 42.67 g.41.5.1 45227 2conA 79 42.70 g.41.15.1 130680 2daeA 75 43.32 2j01V 101 43.69 1lkoA 191 45.14 a.25.1.1,g.41.5.1 78063,78064 2pmzP 48 46.33 1ryt 190 46.92 1yk4A 52 47.11 1kbeA 49 47.68 g.49.1.1 68380 2fdn 55 49.18 1bq8A 54 49.88 g.41.5.1 45237 1brfA 53 50.07 g.41.5.1 45236 1rb9 53 50.24 3bk3C 67 50.26 1sl4A 155 51.95 d.169.1.1 105710 2fcwB 80 52.66 g.12.1.1,g.12.1.1 133289,133290 1ss3A 50 55.61 g.2.3.1 105975 1h98A 78 55.69 d.58.1.2 65743 1ajjA 37 56.23 g.12.1.1 44609 1bq9A 54 57.98 g.41.5.1 45238 1jhdA 396 58.24 b.122.1.3,c.26.1.5 66712,66713 3c7bA 417 58.57 1vfyA 73 60.57 g.50.1.1 45357 1f5yA 85 62.07 g.12.1.1,g.12.1.1 44610,44611 1aqdA 192 66.28 b.1.1.2,d.19.1.1 21585,38159 1l3yA 41 66.49 g.3.11.6 73558 1mzbA 136 67.44 a.4.5.42 91497 2axwA 134 68.27 2i13A 190 71.27 k.12.1.1 136964 1ac5A 483 71.65 c.69.1.5 34653 1wpiA 133 73.24 c.47.1.18 121146 1schA 294 79.07 a.93.1.1 18685 6rxnA 45 82.24 g.41.5.1 45222 1mg4A 113 83.53 d.15.11.1 84953 1dloB 427 83.60 e.8.1.2 43041 2oap1 511 83.64 1j8fA 323 83.82 c.31.1.5 62738 1u5kA 244 84.41 b.40.4.13,g.45.1.2 113038,113039 2b8tA 223 84.76 c.37.1.24,g.39.1.14 128109,128110 3bwwA 307 86.49 1r1tA 122 86.97 a.4.5.5 104769 3c5kA 109 88.47 1u5mA 73 88.88 g.27.1.2 113043 2jvmA 80 89.40 1r4yA 136 89.57 d.1.1.3 97056 1afpA 51 89.92 g.26.1.1 44947 2oizD 135 89.99