# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.03584 g.44.1.4 130791 1vk6A 269 0.1356 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.1729 g.41.16.1 127135 2ausB 60 0.2284 2b1xA 470 0.2906 b.33.1.2,d.129.3.3 127675,127676 2e72A 49 0.9431 1dl6A 58 1.754 g.41.3.1 45207 2bmoA 447 1.844 b.33.1.2,d.129.3.3 128804,128805 1rlyA 60 1.942 g.41.3.1 104988 2de6A 392 1.947 b.33.1.2,d.129.3.3 131415,131416 1uliA 460 1.947 b.33.1.2,d.129.3.3 107921,107922 1q33A 292 2.296 d.113.1.1 95657 1g8kA 825 2.348 b.52.2.2,c.81.1.1 26920,35328 1vm9A 111 3.059 b.33.1.1 108886 1s5aA 150 4.059 d.17.4.10 98525 2e4qA 109 4.072 1ss3A 50 4.730 g.2.3.1 105975 1try 224 5.265 1pq7A 224 5.561 b.47.1.2 95002 1fn8A 224 6.078 b.47.1.2 26012 1jj2Y 73 6.311 g.41.8.1 63110 2qtdA 105 6.957 1fqtA 112 7.175 b.33.1.1 24441 1jd5A 124 7.333 g.52.1.1 66544 3bm4A 210 7.996 1twfL 70 8.523 g.41.9.2 112737 1utyA 187 8.621 b.147.1.1 108036 1xx6A 191 8.652 c.37.1.24,g.39.1.14 116139,116140 1l0qA 391 10.19 b.1.3.1,b.69.2.3 77644,77645 2i7fA 108 10.32 2za8A 167 10.71 1f37A 110 11.02 c.47.1.11 33088 2qu8A 228 11.83 2uvlA 96 12.60 1eg9A 449 12.88 b.33.1.2,d.129.3.3 24443,41322 1cskA 71 12.99 b.34.2.1 24513 1a7iA 81 13.65 g.39.1.3,g.39.1.3 45143,45144 1ulkA 126 13.70 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 2d8aA 348 13.71 3bk3C 67 13.72 1s72Z 73 13.86 g.41.8.1 105345 2de6D 115 14.67 2p26A 280 14.93 1lb3A 182 15.22 a.25.1.1 77873 2q3wA 111 15.32 b.33.1.1 139813 1ptqA 50 16.13 g.49.1.1 45349 2rfkB 53 16.31 1n0zA 45 16.37 g.41.11.1 85247 2ck3G 272 18.49 c.49.2.1 130562 2it1A 362 19.55 2jdiG 273 20.56 c.49.2.1 138272 1tiyA 164 20.67 c.97.1.2 107012 2vrwB 406 21.09 3c0cA 73 22.78 1qxfA 66 23.26 g.41.8.4 96527 1y8qB 640 23.48 1ptq 50 23.52 1c8uA 285 24.66 d.38.1.3,d.38.1.3 38547,38548 2a15A 139 24.77 d.17.4.3 125973 2cvcA 545 25.28 a.138.1.1 130860 1x6mA 196 25.81 b.88.1.4 114920 3d9tA 97 25.89 1vquA 374 26.46 1vclA 432 27.04 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2j015 60 27.43 1p22A 435 27.49 a.158.1.1,b.69.4.1 87715,87716 2bv2A 83 28.42 1lv3A 68 28.44 g.39.1.9 78231 1vhsA 175 29.46 d.108.1.1 100698 2hr7A 486 29.73 1cl4A 60 30.86 g.40.1.1 45171 1rfs 139 31.03 1sjgA 112 31.52 b.33.1.1 105647 4gcr 174 32.66 1rb9 53 32.97 3cngA 189 33.25 1v47A 349 33.58 b.122.1.3,c.26.1.5 100292,100293 2yvpA 182 36.79 1mrjA 247 38.03 d.165.1.1 42177 2qkmB 266 38.25 1dmmA 131 39.18 d.17.4.3 38114 3buuA 229 39.80 2hesX 330 39.98 2r11A 306 41.35 2fmlA 273 41.95 a.4.5.68,d.113.1.6 133778,133779 1opy 131 42.84 2pimA 141 43.16 2riqA 160 43.23 2akaB 299 44.60 c.37.1.8 126914 1qciA 262 45.77 d.165.1.1 42201 2vqeR 88 46.18 1bouB 302 46.21 c.56.6.1 33859 2i3hA 133 46.41 g.52.1.1 137023 3b48A 135 47.41 3b2mA 295 48.52 1ltlA 279 48.64 b.40.4.11 84701 1uj0A 62 48.73 b.34.2.1 99449 2poiA 94 48.79 2hf1A 68 48.81 2o5fA 171 49.09 6rxnA 45 51.20 g.41.5.1 45222 1wkqA 164 51.62 c.97.1.2 109393 1rb9A 52 52.06 g.41.5.1 45214 2bdvA 231 52.91 d.303.1.1 128345 1pgl2 370 53.28 1zvfA 176 53.41 1e3dB 542 53.66 e.18.1.1 59189 1j96A 323 53.93 c.1.7.1 71616 3bbjA 272 54.24 1l3yA 41 54.96 g.3.11.6 73558 1amm 174 55.41 1o8rA 94 56.38 d.234.1.1 86677 1wl7A 312 57.11 b.67.2.1 120996 1ykdA 398 58.91 1yk4A 52 59.68 2f20A 240 59.70 d.303.1.1 132791 2v1rA 80 59.75 2orwA 184 59.97 2pmzP 48 60.25 3c0dA 119 60.30 1lopA 164 60.48 b.62.1.1 27510 2bt6A 108 60.53 d.15.4.1 129152 2qjtA 352 60.83 1ayoA 130 61.17 b.2.4.1 22431 2fa8A 105 62.74 c.47.1.23 133185 1vlyA 338 62.99 b.44.2.1,d.250.1.1 108871,108872 1p9gA 41 63.34 g.3.1.1 104091 1w8kA 447 64.73 1j8eA 44 67.24 g.12.1.1 66437 1cdy 178 68.91 1p6oA 161 68.94 c.97.1.2 94185 2b5lC 222 70.30 2d13A 227 70.42 c.26.2.1 131121 1sqjA 789 71.20 b.69.13.1,b.69.13.1 105918,105919 2amdA 311 73.38 1p9aG 290 74.29 c.10.2.7 87990 1goxA 369 74.57 c.1.4.1 28607 2gbwA 454 74.91 2hvwA 184 75.31 2pveA 54 75.77 1se0A 116 75.78 g.52.1.1 98814 1qh8B 519 76.22 c.92.2.3 35634 1xbtA 193 76.51 c.37.1.24,g.39.1.14 115080,115081 2d8qA 70 78.32 g.85.1.1 131335 1kqfB 294 79.51 d.58.1.5,f.23.22.1 75900,75901 1v8hA 107 79.88 b.1.18.19 119870 1iroA 54 81.45 g.41.5.1 45223 1vqo1 57 82.14 2irpA 208 82.39 1gxrA 337 83.41 b.69.4.1 70722 1h3gA 601 86.33 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1b13A 54 86.39 g.41.5.1 45227 1mmcA 30 86.60 g.3.1.2 44061 1xakA 83 86.81 b.1.24.1 115037 2yqpA 60 89.04 1tw6A 133 89.63 g.52.1.1 112694 1beiA 35 89.68 g.19.1.1 44877 2pvxA 54 89.73