# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vk6A 269 0.5861 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 1.133 g.41.16.1 127135 1q33A 292 1.246 d.113.1.1 95657 1f37A 110 1.567 c.47.1.11 33088 1ma3A 253 1.611 c.31.1.5 78883 3bm4A 210 1.722 2ct7A 86 1.858 g.44.1.4 130791 2e72A 49 2.013 2ausB 60 2.028 1m2kA 249 4.753 c.31.1.5 84754 2di0A 71 6.249 a.5.2.4 131521 2qjtA 352 6.468 1g8kA 825 7.545 b.52.2.2,c.81.1.1 26920,35328 1x6mA 196 8.120 b.88.1.4 114920 1r4yA 136 8.821 d.1.1.3 97056 1m2dA 110 14.12 c.47.1.11 78476 1n0zA 45 16.50 g.41.11.1 85247 1rlyA 60 17.27 g.41.3.1 104988 1hdlA 55 20.10 g.68.1.2 65808 2j015 60 22.08 1dl6A 58 22.14 g.41.3.1 45207 1o8rA 94 22.79 d.234.1.1 86677 1qw2A 102 23.30 d.249.1.1 96456 1wqkA 42 23.34 3c7bA 417 24.93 1mfwA 107 25.05 d.15.11.1 84940 1ayoA 130 28.69 b.2.4.1 22431 1ltlA 279 28.86 b.40.4.11 84701 1fleI 57 30.49 g.3.14.1 44352 1twfL 70 30.90 g.41.9.2 112737 1rtuA 114 32.70 d.1.1.4 36139 1zccA 248 33.09 c.1.18.3 124903 1jd5A 124 34.84 g.52.1.1 66544 2b5hA 200 35.54 b.82.1.19 127894 2eo0A 147 35.80 1v47A 349 38.30 b.122.1.3,c.26.1.5 100292,100293 2qtdA 105 39.31 2pveA 54 40.73 1yc5A 246 42.33 c.31.1.5 122910 2nq2C 253 42.83 2p4dA 172 43.92 3c5kA 109 46.78 2i8tA 167 48.57 1jj2Y 73 49.15 g.41.8.1 63110 2csvA 72 50.29 3bwwA 307 53.67 1l3yA 41 55.20 g.3.11.6 73558 1rb9A 52 56.46 g.41.5.1 45214 2pvxA 54 56.58 1pq7A 224 59.66 b.47.1.2 95002 1ryt 190 59.86 2bt6A 108 59.88 d.15.4.1 129152 2hjhA 354 60.80 2cttA 104 60.80 1cl4A 60 61.31 g.40.1.1 45171 2g45A 129 62.36 1lkoA 191 63.44 a.25.1.1,g.41.5.1 78063,78064 2b4yA 271 63.80 c.31.1.5 127868 1t3qA 168 63.82 a.56.1.1,d.15.4.2 106367,106368 1e0eA 55 65.07 a.4.10.1 59147 1twfB 1224 66.29 e.29.1.1 112726 2a6hC 1119 66.45 e.29.1.1 126264 1yk4A 52 66.88 1iycA 36 67.33 g.31.1.2 83782 1e79G 272 67.62 c.49.2.1 33158 1iroA 54 68.18 g.41.5.1 45223 1aqzA 149 69.99 d.1.1.3 36238 1vhrA 184 70.07 c.45.1.1 32651 2i7rA 118 70.19 d.32.1.2 137102 1rm6C 161 70.33 a.56.1.1,d.15.4.2 111876,111877 1b13A 54 72.39 g.41.5.1 45227 1try 224 72.59 1gwuA 309 73.86 a.93.1.1 83351 1b71A 191 74.10 a.25.1.1,g.41.5.1 16647,45246 2j01V 101 75.05 1y8qB 640 75.25 1q3yA 42 75.60 g.40.1.1 104530 2d8qA 70 76.72 g.85.1.1 131335 2axwA 134 76.97 1mg4A 113 77.25 d.15.11.1 84953 1v54F 98 77.87 g.41.5.3 100327 3cngA 189 80.07 1xakA 83 81.95 b.1.24.1 115037 2jroA 78 83.57 1wba 175 85.77 2yrkA 55 89.32