Best Alignments for T0478

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2itbA/T0478-2itbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2itbA/T0478-2itbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0344e+009.36e-16
1h6gA/T0478-1h6gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h6gA/T0478-1h6gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2375e+009.09e-03 1h6gA a.24.9.1
a.24.9.1
2hi4A/T0478-2hi4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hi4A/T0478-2hi4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1819e+002.43e-09
1xikA/T0478-1xikA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xikA/T0478-1xikA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1208e+011.28e-05 1xikA a.25.1.2
1pfvA/T0478-1pfvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pfvA/T0478-1pfvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8141e+013.89e-06 a.27.1.1
c.26.1.1
g.41.1.1
1vj7A/T0478-1vj7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vj7A/T0478-1vj7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8653e+011.99e-12 a.211.1.1
d.218.1.8
1r03A/T0478-1r03A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r03A/T0478-1r03A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9401e+012.55e-02 a.25.1.1
2quqA/T0478-2quqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2quqA/T0478-2quqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0814e+013.31e-04
2or0A/T0478-2or0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2or0A/T0478-2or0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2709e+011.02e-07
2g3bA/T0478-2g3bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g3bA/T0478-2g3bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3325e+015.23e-09 a.4.1.9
a.121.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001