# List of top-scoring protein chains for T0478.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.soe.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1umwA	237	2.53e+00		d.223.1.2,d.223.1.2	99631,99632
2ogqA	239	2.57e+00		d.223.1.2,d.223.1.2	139063,139064
1q4kA	259	2.82e+00		d.223.1.2,d.223.1.2	95797,95798
1y6dA	120	3.36e+00		a.24.10.5	116504
3c0iA	351	4.46e+00			
2ocgA	254	4.89e+00			
2oclA	254	5.31e+00			
2ockA	254	5.37e+00			
1tp9A	162	5.37e+00		c.47.1.10	119306
2tnfA	156	1.88e+01	2tnfA	b.22.1.1	23880
1v2aA	210	2.02e+01		a.45.1.1,c.47.1.5	100263,100264
1z21A	112	2.03e+01		a.243.1.2	124367
2tsrA	307	2.57e+01	1bkpA	d.117.1.1	41043
1nkrA	201	2.83e+01		b.1.1.4,b.1.1.4	21799,21800
2g03A	194	3.00e+01		a.265.1.1	134490
1im9D	225	3.05e+01	1nkr	b.1.1.4,b.1.1.4	62585,62586
1umnA	165	3.67e+01		a.25.1.1	99607
2ux1A	165	3.67e+01			
1ygsA	234	4.31e+01		b.26.1.1	23907
1ys4A	354	4.33e+01			
1mr1A	235	4.43e+01		b.26.1.1	79418
1u7vB	236	4.57e+01		b.26.1.1	107730
1u7fB	239	4.67e+01		b.26.1.1	107721
2bboA	291	5.27e+01			
2d42A	249	5.29e+01			
1xmjA	290	5.66e+01		c.37.1.12	115494
3bn1A	373	6.06e+01			
2vduB	450	6.11e+01			
2eguA	308	6.28e+01			
2vpzC	253	6.35e+01			
2yz2A	266	6.47e+01			
2h1qA	270	6.68e+01			
1dd1A	268	6.74e+01		b.26.1.1	23908
1g88A	268	6.90e+01	1ygs	b.26.1.1	23911
2btoA	473	7.53e+01			
2bdeA	470	7.99e+01		c.108.1.23	128335