# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v4aA 440 1.93e+00 a.24.16.4,d.218.1.9 108350,108351 1d8cA 723 3.00e+00 1d8cA c.1.13.1 29325 1p7tA 731 4.77e+00 c.1.13.1 94319 1bjt 793 5.37e+00 1bjt 1bjtA 793 5.37e+00 e.11.1.1 43249 1n97A 389 6.33e+00 a.104.1.1 80335 2d1lA 253 6.42e+00 1f4lA 551 6.60e+00 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1pfvA 551 6.61e+00 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2rdzA 452 6.87e+00 3bqoA 211 7.61e+00 1krqA 167 9.44e+00 a.25.1.1 68855 3biqA 467 9.80e+00 2g3bA 208 1.18e+01 a.4.1.9,a.121.1.1 134558,134559 2pg0A 385 1.21e+01 2veqA 565 1.33e+01 3c0iA 351 1.34e+01 2hi4A 495 1.37e+01 1h8eA 510 1.39e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1qgrA 876 1.42e+01 1qgrA a.118.1.1 19119 1tqyA 424 1.43e+01 c.95.1.1,c.95.1.1 107245,107246 2r6gG 296 1.49e+01 2va8A 715 1.55e+01 2jdiA 510 1.57e+01 1qmgA 524 1.61e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 2uxwA 607 1.62e+01 2pziA 681 1.66e+01 1za0A 275 1.67e+01 a.25.1.2 124774 2bptA 861 1.71e+01 a.118.1.1 128951 1jsdB 176 1.74e+01 h.3.1.1 63259 1wwmA 190 1.75e+01 a.132.1.3 121363 2zfoA 140 1.88e+01 1wzdA 215 1.90e+01 a.132.1.1 121493 2f6hX 419 1.93e+01 1r0dA 206 2.03e+01 a.216.1.1 104715 3boqA 160 2.04e+01 1cpcA 162 2.07e+01 1cpcA a.1.1.3 15643 1iw0A 215 2.13e+01 a.132.1.1 83720 2h88A 621 2.29e+01 1alvA 173 2.30e+01 1alvA a.39.1.8 17370 1v2aA 210 2.33e+01 a.45.1.1,c.47.1.5 100263,100264 2px6A 316 2.41e+01 1pu6A 218 2.52e+01 a.96.1.5 95123 1ki1B 352 2.55e+01 a.87.1.1,b.55.1.1 72497,72498 2bb6A 414 2.56e+01 1unlD 208 2.59e+01 a.74.1.1 113326 1keyA 235 2.63e+01 a.118.16.1 72389 2bnxA 386 2.63e+01 a.118.1.23 128861 2p6vA 114 2.67e+01 1csh 435 2.74e+01 1csh 1cshA 435 2.74e+01 a.103.1.1 18880 1eqfA 280 2.75e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1jboA 162 2.75e+01 a.1.1.3 84150 1sw6A 327 2.77e+01 1sw6A d.211.1.1 19176 1txdA 385 2.80e+01 a.87.1.1,b.55.1.1 107422,107423 2pnkA 428 2.93e+01 1z21A 112 2.94e+01 a.243.1.2 124367 1ps1A 337 2.96e+01 1ps1A a.128.1.4 19450 1q15A 503 3.08e+01 c.26.2.1,d.153.1.1 95538,95539 1yoyA 175 3.09e+01 a.211.1.1 123795 3bg2A 444 3.13e+01 2d5bA 500 3.14e+01 a.27.1.1,c.26.1.1 131268,131269 2ax8A 256 3.18e+01 1pjcA 361 3.23e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1ykjA 394 3.32e+01 1kxpD 458 3.41e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 2aqjA 538 3.42e+01 2qwtA 196 3.44e+01 2ax9A 256 3.50e+01 a.123.1.1 127481 2h79A 269 3.52e+01 1s0pA 176 3.53e+01 a.192.1.1 98300 1z2cB 383 3.56e+01 a.118.1.23 124377 3b96A 587 3.56e+01 2rfqA 394 3.60e+01 2f48A 555 3.63e+01 c.89.1.1 132915 1a8h 500 3.71e+01 1a8h 2qeeA 437 3.71e+01 1nrlA 316 3.75e+01 a.123.1.1 92091 1k0iA 394 3.80e+01 c.3.1.2,d.16.1.2 67942,67943 1x9fB 145 3.81e+01 a.1.1.2 114984 2dfkA 402 3.85e+01 1pbe 394 3.92e+01 1pbe 1pbeA 394 3.92e+01 c.3.1.2,d.16.1.2 30338,37869 2fm9A 215 3.95e+01 a.257.1.1 133770 2c5uA 375 3.96e+01 2dvmA 439 4.12e+01 1sxjA 511 4.19e+01 a.80.1.1,c.37.1.20 106081,106082 1epwA 1290 4.23e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2e1dA 331 4.23e+01 1n35A 1267 4.26e+01 e.8.1.4 79935 2hnhA 910 4.50e+01 2o9gA 234 4.51e+01 1r03A 182 4.55e+01 a.25.1.1 104675 2yv9A 291 4.61e+01 2aelA 374 4.65e+01 1yyqA 374 4.71e+01 2ps5A 374 4.75e+01 2qzcA 214 4.84e+01 1nekA 588 4.88e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2qsfX 171 4.88e+01 1q8cA 151 4.94e+01 a.79.1.2 96202 1fchA 368 4.96e+01 1fchA a.118.8.1 19212 2quqA 562 5.00e+01 3ce9A 354 5.02e+01 1ib2A 349 5.03e+01 1ib2A a.118.1.8 62141 2nz8B 313 5.08e+01 a.87.1.1,b.55.1.1 138838,138839 1jnrA 643 5.23e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1y76A 62 5.32e+01 a.194.1.1 122683 1noyA 388 5.33e+01 1clqA c.55.3.5 33713 2itbA 206 5.34e+01 2qf9A 179 5.49e+01 1oj7A 408 5.52e+01 e.22.1.2 103971 1lkoA 191 5.54e+01 a.25.1.1,g.41.5.1 78063,78064 1ovlA 271 5.55e+01 a.123.1.1 87455 1vkeA 133 5.59e+01 a.152.1.2 108650 2csbA 519 5.61e+01 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1kiyA 374 5.64e+01 a.128.1.5 72555 3d2fA 675 5.65e+01 2gwxA 267 5.69e+01 2prgA a.123.1.1 19323 2b0tA 738 5.75e+01 1rp3A 239 5.76e+01 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2qx5A 661 5.76e+01 2a19B 284 5.78e+01 1l7mA 211 5.78e+01 c.108.1.4 73664 1j97A 211 5.84e+01 1f5sA c.108.1.4 62753 2o35A 105 5.87e+01 1mxrA 375 5.93e+01 a.25.1.2 85197 1oi4A 193 5.97e+01 c.23.16.2 87047 1h6gA 256 6.07e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 2v0pA 234 6.18e+01 1uyrA 737 6.21e+01 c.14.1.4,c.14.1.4 100188,100189 2j2fA 363 6.25e+01 1iybA 208 6.30e+01 d.124.1.1 90720 2qqyA 149 6.40e+01 2ntoA 201 6.48e+01 1zc6A 305 6.63e+01 c.55.1.5,c.55.1.5 124888,124889 1r1hA 696 6.66e+01 d.92.1.4 104756 1oq9A 363 6.72e+01 a.25.1.2 87257 2fjbA 643 6.74e+01 1ash 150 6.84e+01 1ash 1ashA 150 6.84e+01 a.1.1.2 15622 2p2wA 367 6.86e+01 2rfbA 343 6.93e+01 1z3iX 644 7.07e+01 c.37.1.19,c.37.1.19 124406,124407 2uw1A 338 7.07e+01 1va6A 518 7.10e+01 d.128.1.4 113598 1fcyA 236 7.12e+01 2lbd a.123.1.1 19282 1xikA 375 7.16e+01 1xikA a.25.1.2 16784 2fug1 438 7.16e+01 1afrA 345 7.19e+01 1afrA a.25.1.2 16805 2hx6A 153 7.20e+01 2gojA 197 7.21e+01 1ihgA 370 7.24e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1kblA 873 7.28e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2qeuA 141 7.30e+01 1souA 194 7.30e+01 c.124.1.6 105858 1x3zB 72 7.34e+01 a.189.1.1 121674 1n46A 258 7.34e+01 a.123.1.1 85315 2awpA 198 7.35e+01 2ax6A 256 7.35e+01 a.123.1.1 127479 2c2jA 211 7.59e+01 1ho8A 480 7.63e+01 1ho8A a.118.1.9 61107 2pvqA 201 7.68e+01 1iqqA 200 7.79e+01 d.124.1.1 66274 1umnA 165 7.93e+01 a.25.1.1 99607 1vz0A 230 7.94e+01 a.4.14.1,d.268.1.1 108929,108930 2p14A 192 7.96e+01 2f2bA 246 7.97e+01 1musA 477 7.98e+01 c.55.3.4 79494