# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ax6A 256 3.35e-01 a.123.1.1 127479 2ax8A 256 3.46e-01 2ax9A 256 3.50e-01 a.123.1.1 127481 1t7rA 269 1.35e+00 a.123.1.1 106635 2f48A 555 2.13e+00 c.89.1.1 132915 2dbnA 461 2.98e+00 2quqA 562 4.28e+00 2veqA 565 4.79e+00 1wr2A 238 5.25e+00 1z21A 112 6.69e+00 a.243.1.2 124367 2cyjA 118 8.04e+00 c.103.1.1 131026 1k0fA 277 8.15e+00 c.92.2.2 71974 1sqnA 261 1.05e+01 a.123.1.1 105944 1bw0A 416 1.07e+01 1bw0A c.67.1.1 34385 1tw9A 206 1.24e+01 a.45.1.1,c.47.1.5 107381,107382 2ps5A 374 1.35e+01 1a28A 256 1.57e+01 1a28A a.123.1.1 19290 1h6gA 256 1.59e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 3c2qA 345 1.74e+01 2herA 368 1.84e+01 1kiyA 374 1.87e+01 a.128.1.5 72555 1ig8A 486 1.90e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1toaA 313 2.00e+01 1toaA c.92.2.2 35598 1v2aA 210 2.03e+01 a.45.1.1,c.47.1.5 100263,100264 1gbs 185 2.05e+01 153l 1gbsA 185 2.05e+01 d.2.1.5 36986 1ffyA 917 2.14e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2db2A 119 2.20e+01 1pcxA 810 2.21e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1sazA 381 2.36e+01 c.55.1.2,c.55.1.2 118925,118926 1sr7A 259 2.60e+01 a.123.1.1 105957 2gk6A 624 2.68e+01 1tu7A 208 2.72e+01 a.45.1.1,c.47.1.5 112653,112654 1pjcA 361 2.75e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 2z4uA 261 3.04e+01 2c43A 323 3.13e+01 1krqA 167 3.14e+01 a.25.1.1 68855 2j5cA 569 3.18e+01 2fuvA 549 3.19e+01 1yyqA 374 3.20e+01 1jnyA 435 3.25e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1hx1B 114 3.35e+01 1hx1B a.7.7.1 61350 1ygs 234 3.46e+01 1ygs 1ygsA 234 3.46e+01 b.26.1.1 23907 3ckdA 312 3.50e+01 2e67A 264 3.65e+01 2ywuA 181 3.76e+01 2qahA 303 3.77e+01 2d4yA 463 3.80e+01 2aelA 374 3.97e+01 3bn1A 373 3.98e+01 2h8gA 267 3.99e+01 2bmeA 186 4.09e+01 c.37.1.8 128790 2fe8A 315 4.13e+01 2pg0A 385 4.21e+01 2vojA 371 4.22e+01 2gvkA 317 4.24e+01 d.58.4.14 135782 1cnt1 187 4.25e+01 1cnt3 1rrmA 386 4.25e+01 e.22.1.2 105081 1xrkA 124 4.36e+01 d.32.1.2 115881 3c68A 761 4.58e+01 1eq1A 166 4.62e+01 a.63.1.1 64910 1ib2A 349 4.71e+01 1ib2A a.118.1.8 62141 2ds3A 761 4.76e+01 3d3iA 761 4.76e+01 2oqpA 134 4.79e+01 2gduA 504 4.82e+01 b.71.1.1,c.1.8.1 135032,135033 1x1iA 752 4.84e+01 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1a79A 171 4.91e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 1uedA 406 5.03e+01 a.104.1.1 99256 2aaxA 275 5.12e+01 1r7aA 504 5.27e+01 b.71.1.1,c.1.8.1 97192,97193 2ct8A 497 5.44e+01 1wywA 230 5.46e+01 3ctpA 330 5.71e+01 1r0dA 206 5.80e+01 a.216.1.1 104715 1nu0A 138 5.86e+01 c.55.3.8 92165 1p8kZ 254 6.02e+01 d.95.2.1,d.95.2.1 94361,94362 2ad9A 119 6.12e+01 d.58.7.1 126580 1q2zA 120 6.12e+01 a.118.19.1 95656 3biqA 467 6.24e+01 1nfvA 179 6.29e+01 a.25.1.1 85642 3bgvA 313 6.45e+01 3c19A 186 6.46e+01 1ab8A 220 6.49e+01 1azsA d.58.29.1 39414 1adjA 421 6.66e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 2eulA 156 6.71e+01 a.2.1.1,d.26.1.2 132392,132393 1ypvA 313 6.71e+01 1p4xA 250 6.83e+01 a.4.5.28,a.4.5.28 87784,87785 2bhvA 246 6.83e+01 1za0A 275 6.95e+01 a.25.1.2 124774 2po1B 277 7.04e+01 2r60A 499 7.33e+01 1xpjA 126 7.34e+01 c.108.1.18 115739 1v7mV 163 7.55e+01 a.26.1.2 100458 2cjeA 268 7.71e+01 1wolA 122 7.91e+01 7aatA 401 7.96e+01 1ajsA c.67.1.1 34250