Best Alignments for T0476

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1ma3A	3.9228e+00	1ma3A/T0476-1ma3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1yc5A	4.8119e+00	1yc5A/T0476-1yc5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
2drpA	5.0930e+00	2drpA/T0476-2drpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1q1aA	5.8245e+00	1q1aA/T0476-1q1aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
2ctdA	6.2973e+00	2ctdA/T0476-2ctdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1l8dA	6.8896e+00	1l8dA/T0476-1l8dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	h.4.12.1
1lv3A	6.9050e+00	1lv3A/T0476-1lv3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.9
2i13A	7.3932e+00	2i13A/T0476-2i13A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.12.1.1
1j8fA	7.8663e+00	1j8fA/T0476-1j8fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5
1rmdA	1.4341e+01	1rmdA/T0476-1rmdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.44.1.1
1a1iA	1.5014e+01	1a1iA/T0476-1a1iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1llmC	1.5188e+01	1llmC/T0476-1llmC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1a1gA	1.5496e+01	1a1gA/T0476-1a1gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1a1hA	1.5991e+01	1a1hA/T0476-1a1hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
2hjhA	2.0352e+01	2hjhA/T0476-2hjhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gx9A	2.5621e+01	2gx9A/T0476-2gx9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.299.1.1
2eloA	2.7172e+01	2eloA/T0476-2eloA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vqoZ	2.7579e+01	1vqoZ/T0476-1vqoZ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
1uu1A	2.8112e+01	1uu1A/T0476-1uu1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.1
2ctuA	2.8306e+01	2ctuA/T0476-2ctuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001