# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 2.939 k.12.1.1 136964 2ctdA 96 4.087 g.37.1.1,g.37.1.1 130792,130793 1c3cA 429 8.573 a.127.1.1 19425 1lv3A 68 9.161 g.39.1.9 78231 1ma3A 253 9.641 c.31.1.5 78883 1ocvA 125 11.52 d.17.4.3 86810 1m3vA 122 14.22 g.39.1.3,g.39.1.3 84794,84795 1ffkW 73 16.27 g.41.8.1 45315 1jj2Y 73 17.50 g.41.8.1 63110 1yc5A 246 18.15 c.31.1.5 122910 2hjhA 354 19.85 1e4uA 78 21.89 g.44.1.1 59231 1vqoZ 83 22.77 g.41.8.1 120387 2qgpA 112 24.61 1ryt 190 25.28 1jkzA 46 25.66 g.3.7.5 66820 1l8dA 112 26.12 h.4.12.1 73687 1a1iA 90 27.63 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1uu1A 335 32.13 c.67.1.1 99993 1we9A 64 32.45 g.50.1.2 114549 2ausB 60 33.44 1s72Z 73 35.55 g.41.8.1 105345 1up6A 416 35.62 c.2.1.5,d.162.1.2 107976,107977 2c1cA 312 36.94 c.56.5.1 129630 1tq6A 413 37.09 c.37.1.8 107202 2apoB 60 37.09 g.41.16.1 127135 2drpA 66 37.44 g.37.1.1,g.37.1.1 45026,45027 1cwyA 500 38.27 c.1.8.1 28789 1g2fC 90 38.34 k.12.1.1 60222 2rfkB 53 40.26 2dulA 378 40.92 2gx9A 129 41.02 d.299.1.1 135828 2fcrA 173 42.30 c.23.5.1 31151 1meyC 87 43.24 k.12.1.1 46430 2b4yA 271 43.48 c.31.1.5 127868 2rk5A 87 46.41 1iazA 179 49.36 b.97.1.1 62131 1wiiA 85 50.37 g.41.3.4 114673 1wjvA 79 51.33 g.37.1.2,g.37.1.2 114713,114714 1up7A 417 52.54 c.2.1.5,d.162.1.2 113374,113375 1lkoA 191 53.00 a.25.1.1,g.41.5.1 78063,78064 2r6zA 258 53.81 1rmdA 116 55.32 g.37.1.1,g.44.1.1 45025,45322 2z61A 370 56.26 1m2kA 249 56.31 c.31.1.5 84754 1aayA 90 58.20 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2pmzP 48 58.87 1a7iA 81 61.59 g.39.1.3,g.39.1.3 45143,45144 2eloA 37 62.74 1b71A 191 63.82 a.25.1.1,g.41.5.1 16647,45246 2gagD 99 63.86 1q1aA 289 64.44 c.31.1.5 95561 2ctuA 73 64.92 2bl0C 142 66.33 1g47A 77 66.59 g.39.1.3,g.39.1.3 45147,45148 2j015 60 69.94 2eoyA 46 70.17 2f6kA 307 70.83 c.1.9.15 133047 1hnnA 282 71.38 c.66.1.15 65895 1z6uA 150 71.57 1pa4A 116 71.85 d.52.7.1 94409 1oksA 56 72.27 a.8.5.1 93271 1zaaC 87 73.69 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 3cxkA 164 76.24 1wjpA 107 76.36 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1oh0A 131 76.42 d.17.4.3 87004 1a1gA 90 77.15 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1srkA 35 77.63 g.37.1.1 105966 1vk6A 269 78.56 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1a1hA 90 81.36 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2gliA 160 82.01 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1twfI 122 84.16 g.41.3.1,g.41.3.1 112733,112734 1j8fA 323 84.86 c.31.1.5 62738 1ck7A 631 86.16 b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 1buqA 125 87.25 d.17.4.3 38111 2coiA 386 87.89