# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 1.686 k.12.1.1 136964 2ctdA 96 4.699 g.37.1.1,g.37.1.1 130792,130793 1ma3A 253 6.005 c.31.1.5 78883 1lv3A 68 8.153 g.39.1.9 78231 1c3cA 429 12.22 a.127.1.1 19425 1a1iA 90 13.04 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1ocvA 125 15.39 d.17.4.3 86810 1yc5A 246 18.53 c.31.1.5 122910 1jj2Y 73 18.56 g.41.8.1 63110 1g2fC 90 19.02 k.12.1.1 60222 1meyC 87 19.12 k.12.1.1 46430 1ffkW 73 19.87 g.41.8.1 45315 1m3vA 122 21.25 g.39.1.3,g.39.1.3 84794,84795 1vqoZ 83 21.44 g.41.8.1 120387 1we9A 64 21.88 g.50.1.2 114549 1l8dA 112 24.08 h.4.12.1 73687 2gx9A 129 24.89 d.299.1.1 135828 2drpA 66 25.08 g.37.1.1,g.37.1.1 45026,45027 2ausB 60 26.91 2hjhA 354 26.92 1aayA 90 27.06 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2qgpA 112 27.10 1jkzA 46 31.86 g.3.7.5 66820 1wjpA 107 32.05 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1zaaC 87 35.87 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1cwyA 500 37.45 c.1.8.1 28789 2eloA 37 37.90 1a1gA 90 39.12 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1s72Z 73 39.31 g.41.8.1 105345 1rmdA 116 40.14 g.37.1.1,g.44.1.1 45025,45322 2rk5A 87 40.43 2apoB 60 40.63 g.41.16.1 127135 2rfkB 53 42.01 1iazA 179 42.75 b.97.1.1 62131 2dulA 378 44.02 1wiiA 85 44.95 g.41.3.4 114673 1up7A 417 47.45 c.2.1.5,d.162.1.2 113374,113375 2z61A 370 48.25 1buqA 125 48.83 d.17.4.3 38111 1wjvA 79 49.83 g.37.1.2,g.37.1.2 114713,114714 1e4uA 78 50.48 g.44.1.1 59231 1a1hA 90 51.36 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2pmzP 48 51.73 2ctuA 73 53.63 1up6A 416 54.49 c.2.1.5,d.162.1.2 107976,107977 1llmC 88 54.68 g.37.1.1,g.37.1.1 91059,91060 1q1aA 289 54.98 c.31.1.5 95561 1uu1A 335 59.48 c.67.1.1 99993 1z6uA 150 60.32 1hnnA 282 61.32 c.66.1.15 65895 2b4yA 271 61.60 c.31.1.5 127868 2c1cA 312 63.34 c.56.5.1 129630 1rmd 116 67.63 2cklB 165 68.71 2eoyA 46 69.83 2gagD 99 70.16 1qjtA 99 70.66 a.39.1.6 17335 1ryt 190 71.08 2fcrA 173 71.67 c.23.5.1 31151 2qmlA 198 72.19 1srkA 35 72.87 g.37.1.1 105966 1pa4A 116 73.91 d.52.7.1 94409 1uw4A 91 74.61 d.58.7.4 100071 2fmpA 335 74.86 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 2bl0C 142 77.08 2j015 60 79.92 2gliA 160 80.00 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1twfI 122 84.61 g.41.3.1,g.41.3.1 112733,112734 2a14A 263 85.05 c.66.1.15 125972 1m2kA 249 87.50 c.31.1.5 84754 1eswA 500 87.76 c.1.8.1 59500