# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ma3A 253 0.4397 c.31.1.5 78883 2i13A 190 0.8279 k.12.1.1 136964 2ctdA 96 1.037 g.37.1.1,g.37.1.1 130792,130793 1yc5A 246 1.430 c.31.1.5 122910 1we9A 64 2.261 g.50.1.2 114549 1e4uA 78 2.983 g.44.1.1 59231 1wjvA 79 3.446 g.37.1.2,g.37.1.2 114713,114714 1q1aA 289 3.875 c.31.1.5 95561 1lv3A 68 4.529 g.39.1.9 78231 2drpA 66 5.263 g.37.1.1,g.37.1.1 45026,45027 1a1iA 90 6.764 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1meyC 87 7.073 k.12.1.1 46430 2hjhA 354 8.749 1g2fC 90 9.277 k.12.1.1 60222 1l8dA 112 10.45 h.4.12.1 73687 1c3cA 429 10.57 a.127.1.1 19425 1m3vA 122 10.77 g.39.1.3,g.39.1.3 84794,84795 1ffkW 73 11.49 g.41.8.1 45315 1aayA 90 12.85 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1wjpA 107 13.61 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1rmdA 116 13.87 g.37.1.1,g.44.1.1 45025,45322 2qgpA 112 14.10 1zaaC 87 14.40 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1vd4A 62 14.91 g.41.3.1 113613 1rmd 116 15.68 1j8fA 323 16.24 c.31.1.5 62738 1alvA 173 16.73 a.39.1.8 17370 2bl0C 142 17.53 1jj2Y 73 18.11 g.41.8.1 63110 1jkzA 46 20.24 g.3.7.5 66820 2ausB 60 21.44 1a1gA 90 21.47 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1llmC 88 22.27 g.37.1.1,g.37.1.1 91059,91060 2obhA 143 22.43 1vqoZ 83 23.33 g.41.8.1 120387 2apoB 60 23.90 g.41.16.1 127135 2eloA 37 24.20 1a1hA 90 24.33 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1wiiA 85 24.35 g.41.3.4 114673 2eoyA 46 24.50 2rk5A 87 24.58 1g47A 77 25.23 g.39.1.3,g.39.1.3 45147,45148 2ctuA 73 25.23 1a7iA 81 27.21 g.39.1.3,g.39.1.3 45143,45144 2b4yA 271 27.60 c.31.1.5 127868 1m2kA 249 30.02 c.31.1.5 84754 1ocvA 125 30.13 d.17.4.3 86810 1buqA 125 31.30 d.17.4.3 38111 2aaoA 166 32.01 2coiA 386 33.81 2fcrA 173 34.03 c.23.5.1 31151 1s72Z 73 35.02 g.41.8.1 105345 1ncx 162 36.16 2gagD 99 37.05 1ryt 190 37.32 1ubdC 124 37.40 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 1uw4A 91 38.50 d.58.7.4 100071 1z6uA 150 39.22 2dulA 378 39.72 6rxnA 45 41.09 g.41.5.1 45222 1cwyA 500 41.42 c.1.8.1 28789 1ur6B 52 43.40 g.44.1.1 99812 1vk6A 269 43.68 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1twfI 122 45.03 g.41.3.1,g.41.3.1 112733,112734 1y1xA 191 45.18 a.39.1.8 116374 1qjtA 99 45.33 a.39.1.6 17335 1ggzA 148 46.25 a.39.1.5 70176 1dx8A 70 46.75 g.41.5.1 45243 1qxfA 66 47.13 g.41.8.4 96527 1exrA 148 47.24 a.39.1.5 17299 2cklB 165 47.36 1iroA 54 48.45 g.41.5.1 45223 2f3yA 148 48.67 1up6A 416 49.78 c.2.1.5,d.162.1.2 107976,107977 1ptqA 50 49.94 g.49.1.1 45349 1b2jA 54 52.10 g.41.5.1 45231 1b13A 54 52.22 g.41.5.1 45227 1y0vH 146 52.26 2dsxA 52 53.14 g.41.5.1 131699 2z0xA 158 54.18 2rfkB 53 54.18 2cklA 108 54.19 1dxgA 36 54.44 g.41.5.2 45247 2a14A 263 54.80 c.66.1.15 125972 1np8A 159 55.63 a.39.1.8 92022 2hq4A 161 57.13 2d9kA 75 57.26 1hnnA 282 57.43 c.66.1.15 65895 1ptq 50 59.17 1tq6A 413 60.16 c.37.1.8 107202 1iciA 256 60.81 c.31.1.5 62266 1oksA 56 61.54 a.8.5.1 93271 2o1rA 81 62.64 2dmiA 115 62.70 1wfeA 86 63.59 g.80.1.1 114579 3cxkA 164 63.73 1x31D 99 65.68 2o5gA 148 65.88 1lkoA 191 67.85 a.25.1.1,g.41.5.1 78063,78064 3cngA 189 68.84 2pveA 54 69.55 1cll 148 69.63 2pvxA 54 70.21 1eswA 500 71.20 c.1.8.1 59500 2hnhA 910 73.12 2occF 98 74.04 g.41.5.3 45256 1srkA 35 74.12 g.37.1.1 105966 2junA 101 75.46 2hu9A 130 76.22 1b8tA 192 76.73 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 45135,45136,45137,45138 2pliA 91 78.91 2fiyA 309 80.01 e.59.1.1 133540 1k81A 36 81.45 g.59.1.1 72136 1rb9 53 81.92 1rb9A 52 86.04 g.41.5.1 45214 1up7A 417 87.44 c.2.1.5,d.162.1.2 113374,113375 1l1dA 152 89.10 b.88.1.3 73452 1bq9A 54 89.66 g.41.5.1 45238 1pc6A 146 89.68 d.262.1.1 94430 1b71A 191 89.98 a.25.1.1,g.41.5.1 16647,45246