# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 2.023 k.12.1.1 136964 1ma3A 253 5.269 c.31.1.5 78883 2ctdA 96 6.877 g.37.1.1,g.37.1.1 130792,130793 1ocvA 125 10.65 d.17.4.3 86810 1c3cA 429 12.00 a.127.1.1 19425 1lv3A 68 12.17 g.39.1.9 78231 1yc5A 246 12.35 c.31.1.5 122910 1vqoZ 83 14.12 g.41.8.1 120387 1jj2Y 73 15.52 g.41.8.1 63110 1ryt 190 17.64 1ffkW 73 19.65 g.41.8.1 45315 2drpA 66 22.12 g.37.1.1,g.37.1.1 45026,45027 1l8dA 112 22.83 h.4.12.1 73687 1m3vA 122 23.28 g.39.1.3,g.39.1.3 84794,84795 2qgpA 112 25.51 1meyC 87 26.79 k.12.1.1 46430 2rfkB 53 28.99 1a1iA 90 29.00 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2ausB 60 29.58 1e4uA 78 29.71 g.44.1.1 59231 1g2fC 90 29.76 k.12.1.1 60222 2dulA 378 33.13 2z61A 370 34.60 1lkoA 191 36.27 a.25.1.1,g.41.5.1 78063,78064 1s72Z 73 36.86 g.41.8.1 105345 1wiiA 85 37.72 g.41.3.4 114673 1wjvA 79 38.68 g.37.1.2,g.37.1.2 114713,114714 2apoB 60 39.77 g.41.16.1 127135 1uu1A 335 39.93 c.67.1.1 99993 2r6zA 258 40.45 2b4yA 271 42.18 c.31.1.5 127868 1up7A 417 42.75 c.2.1.5,d.162.1.2 113374,113375 1zaaC 87 44.08 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1aayA 90 44.60 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1b71A 191 44.79 a.25.1.1,g.41.5.1 16647,45246 1m2kA 249 44.89 c.31.1.5 84754 1uaiA 224 45.87 b.29.1.18 107761 2rk5A 87 46.46 2hjhA 354 48.47 1jkzA 46 48.52 g.3.7.5 66820 1up6A 416 50.85 c.2.1.5,d.162.1.2 107976,107977 1f3rB 257 52.18 b.1.1.1,b.1.1.1 20416,20417 1we9A 64 56.49 g.50.1.2 114549 1iazA 179 56.85 b.97.1.1 62131 1j05B 121 57.74 b.1.1.1 90736 1g47A 77 57.93 g.39.1.3,g.39.1.3 45147,45148 2eoyA 46 58.69 2fcrA 173 60.29 c.23.5.1 31151 1z5zA 271 60.49 c.37.1.19 124499 2gx9A 129 61.20 d.299.1.1 135828 1srkA 35 64.81 g.37.1.1 105966 1uw4A 91 66.45 d.58.7.4 100071 1hnnA 282 66.87 c.66.1.15 65895 1a1gA 90 67.39 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1k81A 36 67.46 g.59.1.1 72136 1wjpA 107 67.66 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1q1aA 289 68.34 c.31.1.5 95561 1cwyA 500 68.96 c.1.8.1 28789 1ubdC 124 69.51 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 2cklB 165 71.65 1vk6A 269 71.91 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2eloA 37 73.86 1s6yA 450 74.79 c.2.1.5,d.162.1.2 105314,105315 2f6kA 307 75.07 c.1.9.15 133047 1eswA 500 75.30 c.1.8.1 59500 1a1hA 90 76.15 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1z6uA 150 82.02 1tq6A 413 82.77 c.37.1.8 107202 1twfI 122 82.83 g.41.3.1,g.41.3.1 112733,112734 2pmzP 48 84.63 1buqA 125 87.26 d.17.4.3 38111 2a14A 263 89.07 c.66.1.15 125972