# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 5.066 k.12.1.1 136964 1ma3A 253 9.477 c.31.1.5 78883 2ctdA 96 11.36 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 16.03 g.39.1.9 78231 1c3cA 429 16.77 a.127.1.1 19425 1yc5A 246 17.28 c.31.1.5 122910 1m3vA 122 20.51 g.39.1.3,g.39.1.3 84794,84795 1jj2Y 73 22.90 g.41.8.1 63110 1vqoZ 83 23.49 g.41.8.1 120387 2r6zA 258 25.51 1l8dA 112 25.91 h.4.12.1 73687 2qgpA 112 26.34 1ocvA 125 27.08 d.17.4.3 86810 1ryt 190 27.20 2z61A 370 28.38 1ffkW 73 28.78 g.41.8.1 45315 2dulA 378 36.91 1e4uA 78 37.48 g.44.1.1 59231 2rfkB 53 40.25 2apoB 60 41.10 g.41.16.1 127135 2gx9A 129 43.17 d.299.1.1 135828 2fcrA 173 43.24 c.23.5.1 31151 2ausB 60 45.34 2hjhA 354 45.46 1uu1A 335 45.76 c.67.1.1 99993 2rk5A 87 46.66 1uaiA 224 47.76 b.29.1.18 107761 1s72Z 73 52.65 g.41.8.1 105345 1lkoA 191 55.12 a.25.1.1,g.41.5.1 78063,78064 2b4yA 271 56.04 c.31.1.5 127868 1up7A 417 56.73 c.2.1.5,d.162.1.2 113374,113375 2drpA 66 57.01 g.37.1.1,g.37.1.1 45026,45027 1meyC 87 58.37 k.12.1.1 46430 1wiiA 85 58.63 g.41.3.4 114673 1jkzA 46 61.60 g.3.7.5 66820 1hnnA 282 62.35 c.66.1.15 65895 1a1iA 90 63.70 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1up6A 416 64.32 c.2.1.5,d.162.1.2 107976,107977 1g47A 77 65.01 g.39.1.3,g.39.1.3 45147,45148 1f3rB 257 65.23 b.1.1.1,b.1.1.1 20416,20417 2f6kA 307 65.57 c.1.9.15 133047 1uw4A 91 67.92 d.58.7.4 100071 1b71A 191 68.25 a.25.1.1,g.41.5.1 16647,45246 1g2fC 90 73.64 k.12.1.1 60222 2eloA 37 74.72 1tq6A 413 79.01 c.37.1.8 107202 1wjvA 79 80.29 g.37.1.2,g.37.1.2 114713,114714 1cwyA 500 82.14 c.1.8.1 28789 1m2kA 249 82.29 c.31.1.5 84754 2c1cA 312 82.81 c.56.5.1 129630 1iazA 179 82.93 b.97.1.1 62131 2pmzP 48 84.15 1s6yA 450 84.16 c.2.1.5,d.162.1.2 105314,105315 1srkA 35 85.22 g.37.1.1 105966 2eoyA 46 86.10 1q1aA 289 87.95 c.31.1.5 95561