# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i13A	190	4.189	k.12.1.1	136964
2ctdA	96	10.05	g.37.1.1,g.37.1.1	130792,130793
1ma3A	253	10.06	c.31.1.5	78883
1c3cA	429	15.96	a.127.1.1	19425
1lv3A	68	17.33	g.39.1.9	78231
1ocvA	125	20.32	d.17.4.3	86810
1yc5A	246	20.97	c.31.1.5	122910
1m3vA	122	24.77	g.39.1.3,g.39.1.3	84794,84795
1vqoZ	83	26.42	g.41.8.1	120387
1l8dA	112	27.27	h.4.12.1	73687
1jj2Y	73	27.95	g.41.8.1	63110
1ffkW	73	30.16	g.41.8.1	45315
1ryt	190	30.97		
2r6zA	258	32.46		
2qgpA	112	33.92		
2dulA	378	39.22		
1e4uA	78	39.60	g.44.1.1	59231
1uu1A	335	41.37	c.67.1.1	99993
2z61A	370	43.62		
2drpA	66	45.54	g.37.1.1,g.37.1.1	45026,45027
1a1iA	90	46.06	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2rfkB	53	46.48		
1eswA	500	47.14	c.1.8.1	59500
1up6A	416	50.22	c.2.1.5,d.162.1.2	107976,107977
1cwyA	500	50.67	c.1.8.1	28789
2ausB	60	51.02		
1up7A	417	51.19	c.2.1.5,d.162.1.2	113374,113375
2gx9A	129	51.38	d.299.1.1	135828
2fcrA	173	54.08	c.23.5.1	31151
2apoB	60	56.80	g.41.16.1	127135
1uw4A	91	60.09	d.58.7.4	100071
1wiiA	85	60.13	g.41.3.4	114673
1meyC	87	60.57	k.12.1.1	46430
2b4yA	271	60.85	c.31.1.5	127868
2rk5A	87	61.04		
1s72Z	73	61.70	g.41.8.1	105345
2f6kA	307	62.76	c.1.9.15	133047
1g2fC	90	62.80	k.12.1.1	60222
2hjhA	354	64.22		
1jkzA	46	65.05	g.3.7.5	66820
1lkoA	191	67.32	a.25.1.1,g.41.5.1	78063,78064
1m2kA	249	71.79	c.31.1.5	84754
1g47A	77	71.93	g.39.1.3,g.39.1.3	45147,45148
1aayA	90	73.24	g.37.1.1,g.37.1.1,g.37.1.1	45001,45002,45003
1uaiA	224	74.01	b.29.1.18	107761
1b71A	191	74.93	a.25.1.1,g.41.5.1	16647,45246
1f3rB	257	75.03	b.1.1.1,b.1.1.1	20416,20417
2eloA	37	77.52		
1hnnA	282	79.45	c.66.1.15	65895
1srkA	35	80.09	g.37.1.1	105966
1we9A	64	80.60	g.50.1.2	114549
1tq6A	413	80.85	c.37.1.8	107202
1zaaC	87	82.52	g.37.1.1,g.37.1.1,g.37.1.1	45013,45014,45015
1j05B	121	83.47	b.1.1.1	90736
1yf3A	259	84.64	c.66.1.28	123046
1iazA	179	88.63	b.97.1.1	62131
2eoyA	46	89.38		
2pmzP	48	89.98