# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 5.626 k.12.1.1 136964 1ma3A 253 8.367 c.31.1.5 78883 1yc5A 246 16.22 c.31.1.5 122910 1meyC 87 22.08 k.12.1.1 46430 1lv3A 68 22.42 g.39.1.9 78231 2ctdA 96 27.42 g.37.1.1,g.37.1.1 130792,130793 1m2kA 249 30.34 c.31.1.5 84754 1a1iA 90 30.43 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2drpA 66 30.52 g.37.1.1,g.37.1.1 45026,45027 2qgpA 112 36.19 1g2fC 90 37.35 k.12.1.1 60222 2apoB 60 41.58 g.41.16.1 127135 1aayA 90 41.61 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1a1gA 90 42.94 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1we9A 64 46.22 g.50.1.2 114549 1ocvA 125 48.06 d.17.4.3 86810 1a1hA 90 51.38 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2cklB 165 52.88 2ausB 60 53.73 1zaaC 87 55.24 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1llmC 88 55.50 g.37.1.1,g.37.1.1 91059,91060 1wjpA 107 56.48 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1vqoZ 83 57.17 g.41.8.1 120387 1jj2Y 73 58.63 g.41.8.1 63110 1f3rB 257 62.86 b.1.1.1,b.1.1.1 20416,20417 1qjtA 99 67.38 a.39.1.6 17335 1ryt 190 70.05 2bl0C 142 71.00 1m3vA 122 71.60 g.39.1.3,g.39.1.3 84794,84795 1b8tA 192 72.65 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 45135,45136,45137,45138 1wiiA 85 72.92 g.41.3.4 114673 2rfkB 53 76.20 1rmdA 116 77.24 g.37.1.1,g.44.1.1 45025,45322 2eloA 37 78.51 1vk6A 269 80.81 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2rk5A 87 83.18 1wjvA 79 84.63 g.37.1.2,g.37.1.2 114713,114714 2b4yA 271 88.12 c.31.1.5 127868