# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 3.693 k.12.1.1 136964 2ctdA 96 15.94 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 20.32 g.39.1.9 78231 1a1iA 90 20.47 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1meyC 87 21.78 k.12.1.1 46430 1g2fC 90 24.90 k.12.1.1 60222 2fcrA 173 24.93 c.23.5.1 31151 1ma3A 253 28.41 c.31.1.5 78883 2drpA 66 32.41 g.37.1.1,g.37.1.1 45026,45027 1m3vA 122 32.60 g.39.1.3,g.39.1.3 84794,84795 1aayA 90 33.98 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1c3cA 429 34.07 a.127.1.1 19425 1jj2Y 73 37.44 g.41.8.1 63110 1llmC 88 37.56 g.37.1.1,g.37.1.1 91059,91060 1yc5A 246 39.13 c.31.1.5 122910 1zaaC 87 39.30 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1vqoZ 83 40.69 g.41.8.1 120387 1a1gA 90 40.71 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1l8dA 112 43.21 h.4.12.1 73687 2ausB 60 43.62 1ffkW 73 45.23 g.41.8.1 45315 1ocvA 125 45.68 d.17.4.3 86810 2apoB 60 45.95 g.41.16.1 127135 1wjvA 79 49.56 g.37.1.2,g.37.1.2 114713,114714 2qgpA 112 50.03 1j05B 121 53.58 b.1.1.1 90736 1a1hA 90 54.53 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2rfkB 53 56.11 1rmdA 116 56.23 g.37.1.1,g.44.1.1 45025,45322 1wjpA 107 56.77 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1f3rB 257 61.04 b.1.1.1,b.1.1.1 20416,20417 1m2kA 249 63.41 c.31.1.5 84754 1z6uA 150 64.17 1we9A 64 65.77 g.50.1.2 114549 2hjhA 354 67.61 2dulA 378 69.31 1jkzA 46 69.76 g.3.7.5 66820 1e4uA 78 71.50 g.44.1.1 59231 1wiiA 85 72.07 g.41.3.4 114673 1ryt 190 72.51 1s72Z 73 72.97 g.41.8.1 105345 1tq6A 413 73.93 c.37.1.8 107202 1uu1A 335 74.89 c.67.1.1 99993 2pmzP 48 75.37 1srkA 35 77.64 g.37.1.1 105966 1up7A 417 87.75 c.2.1.5,d.162.1.2 113374,113375