# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 0.3281 k.12.1.1 136964 1up6A 416 0.6792 c.2.1.5,d.162.1.2 107976,107977 2fcrA 173 0.8102 c.23.5.1 31151 2ctdA 96 0.9849 g.37.1.1,g.37.1.1 130792,130793 2qgpA 112 1.718 2e27H 126 5.860 1l8dA 112 6.340 h.4.12.1 73687 1ncwH 222 6.348 b.1.1.1,b.1.1.2 85555,85556 1yo6A 250 6.658 c.2.1.2 123769 1n0xH 230 6.772 b.1.1.1,b.1.1.2 91528,91529 1q6aA 107 6.826 a.186.1.1 95966 2dulA 378 7.121 1lv3A 68 7.676 g.39.1.9 78231 1meyC 87 8.557 k.12.1.1 46430 1z6uA 150 9.106 1rmdA 116 9.645 g.37.1.1,g.44.1.1 45025,45322 1ic7H 114 10.12 b.1.1.1 62258 1we9A 64 10.51 g.50.1.2 114549 3cssA 267 11.94 1c3cA 429 12.27 a.127.1.1 19425 1g2fC 90 12.39 k.12.1.1 60222 1yf3A 259 13.11 c.66.1.28 123046 1up7A 417 14.61 c.2.1.5,d.162.1.2 113374,113375 2drpA 66 15.79 g.37.1.1,g.37.1.1 45026,45027 1elyA 449 15.84 c.76.1.1 35028 2hnhA 910 16.10 1uw4A 91 16.73 d.58.7.4 100071 1aayA 90 18.55 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2qgqA 304 18.75 1ocvA 125 19.54 d.17.4.3 86810 2i5iA 263 19.78 1e4uA 78 20.68 g.44.1.1 59231 1zaaC 87 22.38 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1ap2B 123 22.45 b.1.1.1 20183 1fuiA 591 23.90 b.43.2.1,c.85.1.1 25674,35444 3cxkA 164 23.90 1a1gA 90 24.72 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1rmd 116 25.05 1ffkW 73 25.63 g.41.8.1 45315 1auwA 468 25.88 a.127.1.1 19416 1llmC 88 26.93 g.37.1.1,g.37.1.1 91059,91060 1q0sA 259 27.75 c.66.1.28 95509 2rk5A 87 28.30 2b30A 301 30.00 c.108.1.10 127759 1a1hA 90 31.17 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1uaiA 224 33.24 b.29.1.18 107761 1jj2Y 73 33.50 g.41.8.1 63110 2ausB 60 33.83 1wjvA 79 35.68 g.37.1.2,g.37.1.2 114713,114714 1uz8B 212 35.86 b.1.1.1,b.1.1.2 108168,108169 1vqoZ 83 36.82 g.41.8.1 120387 1kcvH 217 37.70 b.1.1.1,b.1.1.2 72315,72316 1dgsA 667 38.11 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 2apoB 60 39.02 g.41.16.1 127135 1qj4A 257 40.34 c.69.1.20 34796 1tuhA 156 41.48 d.17.4.11 107345 1j05B 121 42.75 b.1.1.1 90736 1wjpA 107 43.17 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1dzlA 505 45.00 b.121.6.1 23586 1zsoA 164 45.03 b.166.1.1 125610 2ffyA 358 45.39 e.3.1.1 133394 1ibrB 462 45.69 a.118.1.1 19120 1pz5B 220 46.68 b.1.1.1,b.1.1.2 95403,95404 1aj5A 173 47.04 a.39.1.8 17367 2cklB 165 49.35 1xrhA 351 53.83 c.122.1.1 115871 2fqhA 109 54.23 1a1iA 90 54.41 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2fibA 269 55.79 d.171.1.1 42457 1kolA 398 55.86 b.35.1.2,c.2.1.1 77474,77475 1pa4A 116 56.22 d.52.7.1 94409 1ma3A 253 57.21 c.31.1.5 78883 1b2oA 54 57.46 g.41.5.1 45233 2bllA 345 57.76 c.2.1.2 128733 2c1vA 338 58.21 2pmzP 48 58.41 1mjuH 227 59.01 b.1.1.1,b.1.1.2 91302,91303 1jf0A 195 60.12 a.39.1.5 62926 1rzfH 235 61.21 b.1.1.1,b.1.1.2 98150,98151 1thgA 544 62.70 c.69.1.17 34763 1ioaA 240 64.47 b.29.1.1 24168 1yozA 116 64.82 a.253.1.1 123796 1uc8A 280 64.90 c.30.1.6,d.142.1.7 99165,99166 2gx9A 129 65.16 d.299.1.1 135828 1wiiA 85 65.93 g.41.3.4 114673 2obtA 327 67.16 2rfkB 53 67.21 1m3vA 122 67.38 g.39.1.3,g.39.1.3 84794,84795 1srkA 35 67.46 g.37.1.1 105966 1jkzA 46 69.24 g.3.7.5 66820 1vavA 222 69.51 b.29.1.18 108472 1s72Z 73 70.65 g.41.8.1 105345 1oksA 56 70.73 a.8.5.1 93271 1bllE 488 71.61 c.50.1.1,c.56.5.3 33170,33833 3cngA 189 71.64 1u3aA 189 72.40 c.47.1.13 119504 1vd4A 62 73.44 g.41.3.1 113613 1forH 219 73.67 b.1.1.1,b.1.1.2 19989,21045 2eloA 37 75.42 2bl0C 142 75.47 2csgA 424 75.77 b.82.2.12 130768 1pmhX 185 78.48 b.18.1.18 104193 1f75A 249 80.06 c.101.1.1 59662 1ubdC 124 82.75 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 2a77H 222 83.18 b.1.1.2 126328 1i4dA 224 83.88 a.238.1.2 61682 2ywwA 149 86.89 1g47A 77 88.58 g.39.1.3,g.39.1.3 45147,45148 1a7iA 81 88.75 g.39.1.3,g.39.1.3 45143,45144