# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 3.247 k.12.1.1 136964 2ctdA 96 12.31 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 14.81 g.39.1.9 78231 1ma3A 253 16.13 c.31.1.5 78883 1meyC 87 18.02 k.12.1.1 46430 2fcrA 173 19.66 c.23.5.1 31151 1a1iA 90 20.43 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1g2fC 90 23.98 k.12.1.1 60222 1m3vA 122 24.28 g.39.1.3,g.39.1.3 84794,84795 1yc5A 246 27.10 c.31.1.5 122910 1c3cA 429 29.29 a.127.1.1 19425 2drpA 66 30.96 g.37.1.1,g.37.1.1 45026,45027 1l8dA 112 31.20 h.4.12.1 73687 1ffkW 73 32.25 g.41.8.1 45315 1aayA 90 33.63 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1jj2Y 73 34.44 g.41.8.1 63110 2qgpA 112 36.14 1llmC 88 36.68 g.37.1.1,g.37.1.1 91059,91060 1a1gA 90 38.07 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1ocvA 125 38.84 d.17.4.3 86810 1zaaC 87 39.86 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1vqoZ 83 40.70 g.41.8.1 120387 1we9A 64 42.54 g.50.1.2 114549 1m2kA 249 44.44 c.31.1.5 84754 2apoB 60 44.51 g.41.16.1 127135 1wjvA 79 45.41 g.37.1.2,g.37.1.2 114713,114714 1rmdA 116 46.33 g.37.1.1,g.44.1.1 45025,45322 1a1hA 90 49.21 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2ausB 60 50.97 1e4uA 78 52.44 g.44.1.1 59231 1z6uA 150 56.13 1wjpA 107 56.61 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1j05B 121 59.34 b.1.1.1 90736 2hjhA 354 60.79 1s72Z 73 61.88 g.41.8.1 105345 2pmzP 48 63.47 2rfkB 53 64.43 1up6A 416 67.18 c.2.1.5,d.162.1.2 107976,107977 2b4yA 271 67.89 c.31.1.5 127868 1srkA 35 67.94 g.37.1.1 105966 1uu1A 335 68.28 c.67.1.1 99993 1ryt 190 71.22 2gx9A 129 72.60 d.299.1.1 135828 2dulA 378 73.98 1tq6A 413 74.37 c.37.1.8 107202 1jkzA 46 75.46 g.3.7.5 66820 1up7A 417 75.71 c.2.1.5,d.162.1.2 113374,113375 1wiiA 85 78.35 g.41.3.4 114673 1pa4A 116 79.25 d.52.7.1 94409 1omwA 689 83.28 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 2eoyA 46 85.21 1oksA 56 85.73 a.8.5.1 93271