# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 3.390 k.12.1.1 136964 2ctdA 96 6.870 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 12.12 g.39.1.9 78231 2fcrA 173 12.84 c.23.5.1 31151 2qgpA 112 13.61 1ma3A 253 13.74 c.31.1.5 78883 1ocvA 125 16.31 d.17.4.3 86810 1m3vA 122 20.13 g.39.1.3,g.39.1.3 84794,84795 1c3cA 429 23.15 a.127.1.1 19425 1a1iA 90 24.40 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1we9A 64 25.70 g.50.1.2 114549 2drpA 66 27.84 g.37.1.1,g.37.1.1 45026,45027 1ffkW 73 28.12 g.41.8.1 45315 1jj2Y 73 29.45 g.41.8.1 63110 1vqoZ 83 30.39 g.41.8.1 120387 1meyC 87 33.91 k.12.1.1 46430 1e4uA 78 34.59 g.44.1.1 59231 1pa4A 116 34.99 d.52.7.1 94409 1g2fC 90 35.54 k.12.1.1 60222 1l8dA 112 39.06 h.4.12.1 73687 2ausB 60 39.31 2gx9A 129 45.05 d.299.1.1 135828 1yc5A 246 46.22 c.31.1.5 122910 1rmdA 116 47.72 g.37.1.1,g.44.1.1 45025,45322 2r6zA 258 48.46 2rfkB 53 48.54 1aayA 90 49.00 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1jkzA 46 50.15 g.3.7.5 66820 2eloA 37 54.68 1m2kA 249 56.29 c.31.1.5 84754 2apoB 60 56.76 g.41.16.1 127135 1j05B 121 56.94 b.1.1.1 90736 2dulA 378 57.25 1wjvA 79 57.48 g.37.1.2,g.37.1.2 114713,114714 2rk5A 87 61.57 1s72Z 73 63.07 g.41.8.1 105345 1buqA 125 63.45 d.17.4.3 38111 1wiiA 85 63.65 g.41.3.4 114673 2hjhA 354 64.71 1zaaC 87 64.80 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1wjpA 107 65.92 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1ryt 190 66.48 1iazA 179 67.40 b.97.1.1 62131 2pmzP 48 67.43 1a1gA 90 70.43 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1f3rB 257 72.80 b.1.1.1,b.1.1.1 20416,20417 2ctuA 73 76.76 1llmC 88 77.81 g.37.1.1,g.37.1.1 91059,91060 1q1aA 289 77.97 c.31.1.5 95561 2cklB 165 79.21 1uw4A 91 79.91 d.58.7.4 100071 1a1hA 90 82.73 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1hnnA 282 84.63 c.66.1.15 65895 1srkA 35 84.91 g.37.1.1 105966 1a7iA 81 86.26 g.39.1.3,g.39.1.3 45143,45144 2b4yA 271 87.08 c.31.1.5 127868 1up6A 416 88.75 c.2.1.5,d.162.1.2 107976,107977 1g47A 77 89.40 g.39.1.3,g.39.1.3 45147,45148