# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 2.858 k.12.1.1 136964 1ma3A 253 5.432 c.31.1.5 78883 2ctdA 96 6.702 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 9.311 g.39.1.9 78231 1ocvA 125 10.50 d.17.4.3 86810 1yc5A 246 17.65 c.31.1.5 122910 1ffkW 73 19.49 g.41.8.1 45315 1meyC 87 21.13 k.12.1.1 46430 1we9A 64 22.24 g.50.1.2 114549 1a1iA 90 22.74 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1m3vA 122 23.98 g.39.1.3,g.39.1.3 84794,84795 2drpA 66 25.11 g.37.1.1,g.37.1.1 45026,45027 1c3cA 429 26.80 a.127.1.1 19425 1ryt 190 29.27 1jj2Y 73 29.67 g.41.8.1 63110 1vqoZ 83 30.74 g.41.8.1 120387 1e4uA 78 30.75 g.44.1.1 59231 2qgpA 112 30.87 1wjvA 79 31.27 g.37.1.2,g.37.1.2 114713,114714 1l8dA 112 31.68 h.4.12.1 73687 1aayA 90 31.72 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1buqA 125 34.66 d.17.4.3 38111 1g2fC 90 34.93 k.12.1.1 60222 1zaaC 87 37.91 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2fcrA 173 39.45 c.23.5.1 31151 2ausB 60 40.98 1f3rB 257 42.53 b.1.1.1,b.1.1.1 20416,20417 1q1aA 289 47.88 c.31.1.5 95561 1wjpA 107 48.75 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2rfkB 53 50.63 2apoB 60 51.08 g.41.16.1 127135 1g47A 77 52.14 g.39.1.3,g.39.1.3 45147,45148 2hjhA 354 52.15 1lkoA 191 53.37 a.25.1.1,g.41.5.1 78063,78064 1s72Z 73 54.77 g.41.8.1 105345 2ctuA 73 55.46 1jkzA 46 57.00 g.3.7.5 66820 1j05B 121 58.06 b.1.1.1 90736 1a1gA 90 58.81 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 2c1cA 312 59.88 c.56.5.1 129630 1rmdA 116 59.94 g.37.1.1,g.44.1.1 45025,45322 1wiiA 85 60.54 g.41.3.4 114673 1llmC 88 60.60 g.37.1.1,g.37.1.1 91059,91060 2eloA 37 62.05 2dulA 378 65.66 1a1hA 90 66.00 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1a7iA 81 66.08 g.39.1.3,g.39.1.3 45143,45144 2coiA 386 66.95 2rk5A 87 68.38 1tq6A 413 68.65 c.37.1.8 107202 2eoyA 46 69.50 2r6zA 258 70.44 2b4yA 271 75.54 c.31.1.5 127868 2gagD 99 80.04 1cwyA 500 81.65 c.1.8.1 28789 1vk6A 269 83.18 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1ubdC 124 83.25 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 1srkA 35 83.43 g.37.1.1 105966 1twfI 122 84.11 g.41.3.1,g.41.3.1 112733,112734 1m2kA 249 86.77 c.31.1.5 84754 1up6A 416 86.78 c.2.1.5,d.162.1.2 107976,107977 1z6uA 150 87.64 2dmiA 115 88.51 2pmzP 48 88.85 1rmd 116 89.58