# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 4.718 k.12.1.1 136964 2ctdA 96 7.002 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 7.638 g.39.1.9 78231 1ma3A 253 7.767 c.31.1.5 78883 1c3cA 429 16.83 a.127.1.1 19425 1yc5A 246 19.35 c.31.1.5 122910 2fcrA 173 20.13 c.23.5.1 31151 1ocvA 125 20.64 d.17.4.3 86810 2qgpA 112 21.03 1jj2Y 73 22.85 g.41.8.1 63110 1e4uA 78 24.53 g.44.1.1 59231 1m3vA 122 26.20 g.39.1.3,g.39.1.3 84794,84795 1l8dA 112 26.47 h.4.12.1 73687 1ffkW 73 26.78 g.41.8.1 45315 1we9A 64 27.28 g.50.1.2 114549 1vqoZ 83 30.31 g.41.8.1 120387 1wjvA 79 33.87 g.37.1.2,g.37.1.2 114713,114714 1a1iA 90 34.07 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2drpA 66 36.16 g.37.1.1,g.37.1.1 45026,45027 2hjhA 354 37.01 1g2fC 90 38.33 k.12.1.1 60222 1jkzA 46 43.20 g.3.7.5 66820 2gx9A 129 44.65 d.299.1.1 135828 1ryt 190 46.57 1uw4A 91 47.03 d.58.7.4 100071 2ausB 60 47.69 1m2kA 249 47.84 c.31.1.5 84754 2rk5A 87 48.69 1wiiA 85 49.27 g.41.3.4 114673 1meyC 87 50.15 k.12.1.1 46430 1s72Z 73 53.33 g.41.8.1 105345 1up6A 416 53.87 c.2.1.5,d.162.1.2 107976,107977 1aayA 90 54.15 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2dulA 378 54.64 1wjpA 107 56.37 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2apoB 60 57.52 g.41.16.1 127135 2eloA 37 60.59 1tq6A 413 61.51 c.37.1.8 107202 1a7iA 81 62.11 g.39.1.3,g.39.1.3 45143,45144 2coiA 386 63.03 2ctuA 73 63.33 1rmdA 116 64.14 g.37.1.1,g.44.1.1 45025,45322 1up7A 417 64.18 c.2.1.5,d.162.1.2 113374,113375 1q1aA 289 66.20 c.31.1.5 95561 2rfkB 53 66.38 1pa4A 116 67.36 d.52.7.1 94409 1cwyA 500 68.05 c.1.8.1 28789 1buqA 125 68.77 d.17.4.3 38111 1f3rB 257 69.61 b.1.1.1,b.1.1.1 20416,20417 1iazA 179 69.63 b.97.1.1 62131 1zaaC 87 71.79 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1lkoA 191 76.18 a.25.1.1,g.41.5.1 78063,78064 1uu1A 335 77.41 c.67.1.1 99993 1qjtA 99 78.36 a.39.1.6 17335 2pmzP 48 79.10 2gliA 160 79.55 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1j05B 121 80.57 b.1.1.1 90736 2gagD 99 82.10 2eoyA 46 85.34 1vk6A 269 85.50 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2z61A 370 89.94 2b4yA 271 89.96 c.31.1.5 127868 2c1cA 312 89.99 c.56.5.1 129630