# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ma3A 253 1.650 c.31.1.5 78883 2i13A 190 2.814 k.12.1.1 136964 1yc5A 246 4.198 c.31.1.5 122910 2qgpA 112 5.139 1m2kA 249 6.686 c.31.1.5 84754 2b4yA 271 8.218 c.31.1.5 127868 2ctdA 96 14.22 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 15.96 g.39.1.9 78231 1vqoZ 83 18.06 g.41.8.1 120387 1pa4A 116 19.29 d.52.7.1 94409 1wiiA 85 19.43 g.41.3.4 114673 1rmdA 116 19.66 g.37.1.1,g.44.1.1 45025,45322 1q1aA 289 23.64 c.31.1.5 95561 1a1iA 90 24.58 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1iciA 256 25.92 c.31.1.5 62266 2rk5A 87 28.29 1ocvA 125 29.66 d.17.4.3 86810 1ffkW 73 30.03 g.41.8.1 45315 1vk6A 269 30.45 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2drpA 66 31.61 g.37.1.1,g.37.1.1 45026,45027 1g2fC 90 32.17 k.12.1.1 60222 1e4uA 78 32.31 g.44.1.1 59231 2apoB 60 32.63 g.41.16.1 127135 1m3vA 122 33.80 g.39.1.3,g.39.1.3 84794,84795 1jj2Y 73 34.38 g.41.8.1 63110 1meyC 87 34.50 k.12.1.1 46430 2r6zA 258 34.99 1b71A 191 37.36 a.25.1.1,g.41.5.1 16647,45246 2pmzP 48 38.56 1g47A 77 40.70 g.39.1.3,g.39.1.3 45147,45148 1a7iA 81 40.93 g.39.1.3,g.39.1.3 45143,45144 2rfkB 53 45.38 1llmC 88 45.71 g.37.1.1,g.37.1.1 91059,91060 2cklB 165 46.97 1aayA 90 47.43 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1twfI 122 47.51 g.41.3.1,g.41.3.1 112733,112734 2e6rA 92 48.18 1we9A 64 49.26 g.50.1.2 114549 2puyA 60 50.23 1zaaC 87 58.98 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2qjoA 341 61.76 1xnfA 275 64.58 a.118.8.1 115580 2dulA 378 66.87 1s72Z 73 68.22 g.41.8.1 105345 1fp0A 88 69.76 g.50.1.2 45361 1rmd 116 70.76 1j8fA 323 73.97 c.31.1.5 62738 3cngA 189 74.65 1omwA 689 74.65 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1a1gA 90 75.00 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1cxxA 113 76.01 g.39.1.3,g.39.1.3 45139,45140 1u5kA 244 76.08 b.40.4.13,g.45.1.2 113038,113039 1lkoA 191 77.01 a.25.1.1,g.41.5.1 78063,78064 2pliA 91 78.37 2dpmA 284 79.82 c.66.1.28 34246 1qjtA 99 80.04 a.39.1.6 17335 1hk8A 605 80.50 c.7.1.3 83540 2ozjA 114 83.19 2ausB 60 85.46 1qjdA 571 87.73 a.138.1.3,c.3.1.4,d.168.1.1 19695,30432,42315 9atcB 146 89.95 d.58.2.1,g.41.7.1 39057,45309 1iazA 179 89.97 b.97.1.1 62131