# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 0.6798 k.12.1.1 136964 1ma3A 253 1.286 c.31.1.5 78883 2ctdA 96 2.453 g.37.1.1,g.37.1.1 130792,130793 2qgpA 112 3.964 1m2kA 249 6.012 c.31.1.5 84754 1we9A 64 6.164 g.50.1.2 114549 1meyC 87 7.495 k.12.1.1 46430 1yc5A 246 8.175 c.31.1.5 122910 1omwA 689 8.583 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1ocvA 125 8.814 d.17.4.3 86810 1lv3A 68 9.366 g.39.1.9 78231 1a1iA 90 10.11 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2drpA 66 10.32 g.37.1.1,g.37.1.1 45026,45027 1g2fC 90 12.81 k.12.1.1 60222 1ffkW 73 15.25 g.41.8.1 45315 1vqoZ 83 16.43 g.41.8.1 120387 1a1gA 90 16.52 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1llmC 88 16.58 g.37.1.1,g.37.1.1 91059,91060 1aayA 90 17.70 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1jj2Y 73 19.09 g.41.8.1 63110 1ubdC 124 21.24 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 1zaaC 87 21.48 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1a1hA 90 23.29 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2apoB 60 23.44 g.41.16.1 127135 1xnfA 275 23.80 a.118.8.1 115580 2r6zA 258 24.56 2b4yA 271 25.15 c.31.1.5 127868 2rfkB 53 26.85 1g47A 77 28.15 g.39.1.3,g.39.1.3 45147,45148 1wjvA 79 30.05 g.37.1.2,g.37.1.2 114713,114714 2ausB 60 30.32 2rk5A 87 32.29 2ctuA 73 34.28 1rmdA 116 34.57 g.37.1.1,g.44.1.1 45025,45322 1qjtA 99 34.65 a.39.1.6 17335 1f3rB 257 35.28 b.1.1.1,b.1.1.1 20416,20417 1pa4A 116 35.86 d.52.7.1 94409 3cngA 189 36.46 1a7iA 81 37.28 g.39.1.3,g.39.1.3 45143,45144 1q1aA 289 37.64 c.31.1.5 95561 1twfI 122 39.43 g.41.3.1,g.41.3.1 112733,112734 1iciA 256 40.35 c.31.1.5 62266 1s72Z 73 41.80 g.41.8.1 105345 1wiiA 85 42.91 g.41.3.4 114673 2cklB 165 45.33 2f86B 143 46.71 1dx8A 70 53.30 g.41.5.1 45243 2pmzP 48 53.76 1iazA 179 54.37 b.97.1.1 62131 2dmiA 115 54.68 1srkA 35 55.35 g.37.1.1 105966 2dulA 378 55.70 1k81A 36 59.25 g.59.1.1 72136 2eloA 37 59.28 1iroA 54 60.23 g.41.5.1 45223 1m3vA 122 60.89 g.39.1.3,g.39.1.3 84794,84795 2e6rA 92 62.66 1vk6A 269 62.89 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1rmd 116 65.47 1kd6A 179 65.60 b.97.1.1 68459 1yk4A 52 66.03 1tq6A 413 69.31 c.37.1.8 107202 2qgqA 304 70.11 1yc7A 124 78.21 1j8fA 323 79.27 c.31.1.5 62738 1cxxA 113 80.30 g.39.1.3,g.39.1.3 45139,45140 1v2zA 111 82.06 a.186.1.1 108300 1cpnA 208 82.29 b.29.1.2 24175 1wjpA 107 82.46 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1j05B 121 83.12 b.1.1.1 90736 1gbgA 214 86.71 b.29.1.2 24171 1l8dA 112 88.31 h.4.12.1 73687 2gcoA 201 88.43 1buqA 125 89.58 d.17.4.3 38111