# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ck7A 631 2.454 b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 2i66A 262 5.623 1yh3A 256 6.752 1mw5A 187 7.782 d.259.1.1 91477 1t95A 240 9.583 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1y1xA 191 10.55 a.39.1.8 116374 2i13A 190 11.35 k.12.1.1 136964 2bo5A 120 11.63 1n81A 186 11.78 a.185.1.1 85388 1jr5A 90 12.80 a.150.1.1 67113 1ajqB 557 13.46 1e3aB 560 13.65 2cjgA 449 15.37 1lm5A 214 15.50 d.211.2.1 74029 2qh9A 184 16.60 2i0xA 85 17.72 1yc5A 246 18.42 c.31.1.5 122910 1vzyA 291 19.69 d.193.1.1,g.81.1.1 114042,114043 1wwhA 119 19.71 d.58.7.1 121358 2gwmA 200 19.86 1gk1B 522 20.12 1ug3A 339 20.69 a.118.1.14,a.118.1.14 119671,119672 1gk9B 557 21.89 2yxbA 161 24.03 2qmlA 198 24.24 1cpzA 68 24.31 d.58.17.1 39351 2c0rA 362 24.49 c.67.1.4 129604 1i3jA 116 24.93 d.285.1.1 61594 2o3sA 262 27.72 1cc8A 73 29.29 d.58.17.1 39343 1b4aA 149 29.99 a.4.5.3,d.74.2.1 16088,39721 1j5sA 463 31.47 c.1.9.8 71580 1fm2B 520 33.31 1zybA 232 34.48 a.4.5.4,b.82.3.2 125815,125816 1alvA 173 35.14 a.39.1.8 17370 1a1hA 90 36.49 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 4blmA 265 38.15 e.3.1.1 42721 2i7aA 174 38.21 1xfjA 261 38.75 d.194.1.2 109585 1vrmA 325 39.17 d.96.2.1 120472 1kfuS 184 40.79 a.39.1.8 68574 2cy8A 453 41.96 2f1fA 164 42.15 d.58.18.6,d.58.18.6 132760,132761 1f4qA 165 43.80 a.39.1.8 17360 1s1eA 224 45.54 a.39.1.5 112007 1gkfB 557 45.56 2rg8A 165 45.68 1fc4A 401 46.09 c.67.1.4 59760 2bh9A 489 47.11 1u7kA 131 47.81 a.73.1.1 113087 1x19A 359 49.53 2nq2A 337 50.81 1hqvA 191 51.72 a.39.1.8 61160 1w23A 360 52.62 c.67.1.4 114088 1mwyA 73 53.95 d.58.17.1 79616 2dfwA 396 54.15 2gukA 120 55.35 1j1iA 296 55.56 c.69.1.10 83977 1vqzA 341 59.35 d.224.1.3,d.104.1.3 120426,120427 1xvjA 109 60.33 2cs2A 134 61.82 1yjrA 75 62.02 1vq0A 302 62.24 d.193.1.1,g.81.1.1 114000,114001 1k94A 165 63.56 a.39.1.8 68333 1hekA 131 65.29 a.61.1.5 65818 1wjpA 107 65.56 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2dkzA 84 66.51 2erbA 125 66.54 5palA 109 67.01 a.39.1.4 17215 1aw0 72 67.66 1b0nA 111 68.40 a.34.1.1,a.35.1.3 17001,17064 1mn8A 100 68.53 a.61.1.6 79318 1ytaA 180 69.06 c.55.3.5 124002 1pvaA 110 69.40 a.39.1.4 17207 1np8A 159 69.72 a.39.1.8 92022 2ekcA 262 70.42 2qkmB 266 70.53 1lmzA 187 71.16 a.96.1.4 74037 2d9kA 75 72.26 1kn1B 161 73.26 a.1.1.3 77456 1cnoA 87 73.48 a.3.1.1 15814 1cukA 203 73.84 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1qjtA 99 74.07 a.39.1.6 17335 2pvbA 107 76.19 a.39.1.4 17205 1ohvA 472 77.97 c.67.1.4 93031 1p9qC 256 78.26 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1mh3A 421 79.08 a.4.1.1,c.94.1.1 79112,79113 2qgpA 112 79.23 3bd1A 79 81.56 2a8eA 220 81.56 d.296.1.1 126397 1ff9A 450 82.26 c.2.1.3,d.81.1.2 30039,39954 2ad9A 119 83.05 d.58.7.1 126580 1x2iA 75 83.99 a.60.2.5 121641 2cfxA 144 86.09 a.4.5.32,d.58.4.2 130395,130396 1z7dA 433 86.44 c.67.1.4 124600 1vraA 208 86.50 2vfkA 205 86.50 1pfkA 320 86.76 c.89.1.1 35575 4cpvA 108 87.17 a.39.1.4 17198 2ccjA 205 87.54 1a2xA 159 87.77 a.39.1.5 17251 1a1gA 90 88.56 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1wexA 104 89.35 d.58.7.1 114568 2dxeA 160 89.40 d.58.6.1 131870 2grvA 621 89.71 1tuzA 118 89.92 a.39.1.7 112670