# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1q1aA	289	1.670	c.31.1.5	95561
1yc5A	246	1.870	c.31.1.5	122910
1j8fA	323	2.053	c.31.1.5	62738
1uu1A	335	2.931	c.67.1.1	99993
1rmdA	116	6.348	g.37.1.1,g.44.1.1	45025,45322
1tq4A	413	7.857	c.37.1.8	107201
2drpA	66	9.568	g.37.1.1,g.37.1.1	45026,45027
2ctdA	96	10.42	g.37.1.1,g.37.1.1	130792,130793
1ma3A	253	10.70	c.31.1.5	78883
1vk6A	269	10.95	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1l8dA	112	12.44	h.4.12.1	73687
1lv3A	68	12.51	g.39.1.9	78231
2hnhA	910	21.08		
1yuiA	54	21.23	g.37.1.1	45073
1h2iA	209	21.45	d.50.1.3	76550
2i13A	190	23.48	k.12.1.1	136964
2gx9A	129	26.16	d.299.1.1	135828
3cwfA	122	27.41		
1a1hA	90	34.76	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1xvhA	129	37.63	a.8.1.2,a.8.1.2	116084,116085
1a7iA	81	38.09	g.39.1.3,g.39.1.3	45143,45144
2pmzP	48	38.17		
1a1gA	90	39.74	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2eloA	37	39.78		
2q49A	359	43.19	c.2.1.3,d.81.1.1	139831,139832
1hk8A	605	43.21	c.7.1.3	83540
1m2kA	249	44.70	c.31.1.5	84754
2hjhA	354	45.92		
2qkdA	404	47.44		
1c3cA	429	47.82	a.127.1.1	19425
1a1iA	90	49.48	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1vqoZ	83	52.83	g.41.8.1	120387
2d9kA	75	53.20		
1oksA	56	53.46	a.8.5.1	93271
2c5kT	95	54.02		
1llmC	88	54.85	g.37.1.1,g.37.1.1	91059,91060
1x31D	99	55.15		
2f42A	179	57.60		
2jrpA	81	57.94		
2c1dA	264	58.31		
1rmd	116	59.19		
1wjpA	107	60.61	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
2r5xA	129	62.57		
1zsoA	164	65.12	b.166.1.1	125610
2cveA	191	66.95	d.14.1.11,d.58.11.2	130869,130870
1yqdA	366	67.54		
2b9dA	52	71.93		
2hq4A	161	72.41		
2fiyA	309	72.63	e.59.1.1	133540
2gagD	99	72.64		
1qxfA	66	75.94	g.41.8.4	96527
2g5gX	268	76.54		
1vqtA	213	77.38	c.1.2.3	120417
2hu9A	130	80.37		
1wdcC	156	80.46	a.39.1.5	17317
3cngA	189	80.67		
2ct0A	74	83.50		
2b4yA	271	85.25	c.31.1.5	127868
1ggzA	148	85.74	a.39.1.5	70176
1x9zA	188	86.17	d.292.1.1	115019
2apoB	60	86.56	g.41.16.1	127135
2obhA	143	87.42