# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q1aA 289 1.339 c.31.1.5 95561 1yc5A 246 1.836 c.31.1.5 122910 1j8fA 323 2.486 c.31.1.5 62738 1uu1A 335 4.376 c.67.1.1 99993 1rmdA 116 5.370 g.37.1.1,g.44.1.1 45025,45322 2drpA 66 6.839 g.37.1.1,g.37.1.1 45026,45027 1ma3A 253 8.380 c.31.1.5 78883 1vk6A 269 8.475 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2ctdA 96 8.775 g.37.1.1,g.37.1.1 130792,130793 1l8dA 112 9.905 h.4.12.1 73687 1lv3A 68 10.02 g.39.1.9 78231 1tq4A 413 11.54 c.37.1.8 107201 2i13A 190 14.37 k.12.1.1 136964 1yuiA 54 17.34 g.37.1.1 45073 2gx9A 129 17.63 d.299.1.1 135828 1rutX 188 19.40 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1a1hA 90 20.47 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2d9kA 75 21.52 1a1gA 90 21.67 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1a1iA 90 24.84 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1hk8A 605 25.79 c.7.1.3 83540 1vqoZ 83 25.85 g.41.8.1 120387 1llmC 88 26.65 g.37.1.1,g.37.1.1 91059,91060 2eloA 37 28.91 3cwfA 122 29.56 2hnhA 910 32.59 1vqtA 213 34.90 c.1.2.3 120417 1wjpA 107 40.29 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2pmzP 48 42.01 2hjhA 354 42.11 2cveA 191 43.10 d.14.1.11,d.58.11.2 130869,130870 2jrpA 81 43.73 2f42A 179 47.76 1h2iA 209 49.66 d.50.1.3 76550 1rmd 116 50.34 3cngA 189 50.62 1qxfA 66 51.35 g.41.8.4 96527 1m2kA 249 52.75 c.31.1.5 84754 1xvhA 129 56.72 a.8.1.2,a.8.1.2 116084,116085 2qkdA 404 56.94 2c5kT 95 58.83 1x31D 99 60.01 2fiyA 309 61.60 e.59.1.1 133540 2gmgA 105 61.88 1wjvA 79 63.64 g.37.1.2,g.37.1.2 114713,114714 1zsoA 164 63.86 b.166.1.1 125610 1c3cA 429 68.77 a.127.1.1 19425 1a7iA 81 69.77 g.39.1.3,g.39.1.3 45143,45144 2gnrA 145 70.34 2b9dA 52 71.25 2ct0A 74 75.94 2hu9A 130 77.12 2ctuA 73 83.83 1jjzA 29 83.95 g.3.3.1 71699 2gagD 99 84.16 2r5xA 129 84.83 1yfuA 174 88.05 b.82.1.20 123094