# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yc5A 246 0.2411 c.31.1.5 122910 1q1aA 289 0.2646 c.31.1.5 95561 1j8fA 323 0.6028 c.31.1.5 62738 1ma3A 253 1.122 c.31.1.5 78883 1rmdA 116 1.977 g.37.1.1,g.44.1.1 45025,45322 2drpA 66 2.010 g.37.1.1,g.37.1.1 45026,45027 2ctdA 96 3.472 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 6.015 g.39.1.9 78231 2d9kA 75 6.276 1tq4A 413 6.594 c.37.1.8 107201 2i13A 190 7.187 k.12.1.1 136964 1wjvA 79 8.672 g.37.1.2,g.37.1.2 114713,114714 1vk6A 269 9.364 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1a1hA 90 9.812 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1a1gA 90 10.05 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1uu1A 335 11.24 c.67.1.1 99993 1yuiA 54 11.53 g.37.1.1 45073 1a1iA 90 12.64 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1wjpA 107 13.03 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2hjhA 354 14.52 1rutX 188 14.80 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1l8dA 112 14.80 h.4.12.1 73687 1ggzA 148 16.25 a.39.1.5 70176 1exrA 148 16.60 a.39.1.5 17299 2eloA 37 18.58 1llmC 88 19.10 g.37.1.1,g.37.1.1 91059,91060 2f3yA 148 20.23 2hnhA 910 22.62 1hk8A 605 22.71 c.7.1.3 83540 1yqdA 366 24.25 2obhA 143 24.61 2ct0A 74 25.03 2cveA 191 26.50 d.14.1.11,d.58.11.2 130869,130870 1rmd 116 27.50 2aaoA 166 28.56 2bl0C 142 30.49 1we9A 64 31.85 g.50.1.2 114549 1qxfA 66 35.39 g.41.8.4 96527 1a2xA 159 35.45 a.39.1.5 17251 2b9dA 52 35.62 2f42A 179 36.61 1m2kA 249 37.25 c.31.1.5 84754 1x31D 99 37.42 2ctuA 73 40.09 2o5gA 148 40.20 3cngA 189 43.30 1vqoZ 83 44.55 g.41.8.1 120387 1y1xA 191 44.66 a.39.1.8 116374 2gagD 99 44.75 2hu9A 130 46.16 1topA 162 46.23 a.39.1.5 17223 1wdcC 156 47.14 a.39.1.5 17317 2gmgA 105 47.42 2gx9A 129 48.18 d.299.1.1 135828 1alvA 173 48.25 a.39.1.8 17370 1oksA 56 49.26 a.8.5.1 93271 2qkdA 404 50.86 1c3cA 429 50.99 a.127.1.1 19425 1vzyA 291 51.76 d.193.1.1,g.81.1.1 114042,114043 2hq4A 161 54.31 1dxgA 36 55.61 g.41.5.2 45247 1ptq 50 56.59 1a7iA 81 56.87 g.39.1.3,g.39.1.3 45143,45144 1sg6A 393 57.24 e.22.1.1 105522 1tq6A 413 65.81 c.37.1.8 107202 6rxnA 45 66.05 g.41.5.1 45222 1twfI 122 66.05 g.41.3.1,g.41.3.1 112733,112734 2rk5A 87 67.41 2jrpA 81 67.66 2b4yA 271 68.77 c.31.1.5 127868 2apoB 60 71.50 g.41.16.1 127135 2i7aA 174 74.02 1ptqA 50 74.41 g.49.1.1 45349 1t8kA 77 75.15 a.28.1.1 106666 2ehsA 77 76.14 1x9zA 188 77.73 d.292.1.1 115019 3cwfA 122 77.93 2gv5A 161 78.95 2qgpA 112 79.32 2fiyA 309 80.90 e.59.1.1 133540 2c5kT 95 82.28 1w24A 182 87.24 d.159.1.7 120579 1zu1A 127 88.29 1x6mA 196 88.58 b.88.1.4 114920