# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	2.357	c.31.1.5	122910
1q1aA	289	2.901	c.31.1.5	95561
1uu1A	335	3.572	c.67.1.1	99993
1j8fA	323	5.837	c.31.1.5	62738
1vk6A	269	8.700	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2drpA	66	10.13	g.37.1.1,g.37.1.1	45026,45027
2gx9A	129	12.25	d.299.1.1	135828
1ma3A	253	12.26	c.31.1.5	78883
1l8dA	112	12.39	h.4.12.1	73687
1rmdA	116	12.69	g.37.1.1,g.44.1.1	45025,45322
2ctdA	96	13.33	g.37.1.1,g.37.1.1	130792,130793
1lv3A	68	14.41	g.39.1.9	78231
1tq4A	413	14.80	c.37.1.8	107201
1yuiA	54	20.64	g.37.1.1	45073
3cwfA	122	21.43		
2i13A	190	24.40	k.12.1.1	136964
1hk8A	605	24.42	c.7.1.3	83540
2qkdA	404	26.81		
1vqoZ	83	26.86	g.41.8.1	120387
2cveA	191	27.17	d.14.1.11,d.58.11.2	130869,130870
1rutX	188	29.02	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
3cngA	189	35.46		
1a1hA	90	37.86	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1a1gA	90	46.15	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2eloA	37	47.77		
1yfuA	174	50.70	b.82.1.20	123094
1h2iA	209	51.87	d.50.1.3	76550
2hnhA	910	52.63		
1m2kA	249	55.97	c.31.1.5	84754
1a1iA	90	57.64	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2g5gX	268	58.46		
2pmzP	48	59.78		
1lkoA	191	60.77	a.25.1.1,g.41.5.1	78063,78064
1vqtA	213	62.31	c.1.2.3	120417
1uacH	114	63.21	b.1.1.1	99132
2q49A	359	63.36	c.2.1.3,d.81.1.1	139831,139832
2hu9A	130	63.79		
2b9dA	52	65.66		
1a7iA	81	65.91	g.39.1.3,g.39.1.3	45143,45144
1qxfA	66	66.49	g.41.8.4	96527
2c5kT	95	68.29		
2f42A	179	71.44		
2jrpA	81	73.95		
1q33A	292	75.27	d.113.1.1	95657
2ppwA	216	76.88		
1zsoA	164	78.81	b.166.1.1	125610
1zu1A	127	79.04		
2b4yA	271	79.54	c.31.1.5	127868
2c1dA	264	80.92		
2r5xA	129	82.46		
1llmC	88	83.46	g.37.1.1,g.37.1.1	91059,91060
1rmd	116	84.96		
2fiyA	309	85.01	e.59.1.1	133540
1pmhX	185	87.94	b.18.1.18	104193