# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yc5A	246	2.632	c.31.1.5	122910
1uu1A	335	3.122	c.67.1.1	99993
1q1aA	289	3.224	c.31.1.5	95561
1j8fA	323	5.310	c.31.1.5	62738
1vk6A	269	8.730	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2gx9A	129	11.83	d.299.1.1	135828
1rmdA	116	12.80	g.37.1.1,g.44.1.1	45025,45322
1ma3A	253	13.10	c.31.1.5	78883
1l8dA	112	13.25	h.4.12.1	73687
1tq4A	413	14.89	c.37.1.8	107201
2drpA	66	14.98	g.37.1.1,g.37.1.1	45026,45027
1lv3A	68	15.02	g.39.1.9	78231
1hk8A	605	18.59	c.7.1.3	83540
2ctdA	96	18.86	g.37.1.1,g.37.1.1	130792,130793
2cveA	191	22.69	d.14.1.11,d.58.11.2	130869,130870
1yuiA	54	23.05	g.37.1.1	45073
3cwfA	122	25.59		
2qkdA	404	27.02		
1h2iA	209	34.43	d.50.1.3	76550
2i13A	190	35.36	k.12.1.1	136964
1rutX	188	36.56	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2hnhA	910	38.30		
1vqoZ	83	40.94	g.41.8.1	120387
3cngA	189	43.78		
2eloA	37	44.80		
1q33A	292	48.33	d.113.1.1	95657
1yfuA	174	49.14	b.82.1.20	123094
1lkoA	191	49.21	a.25.1.1,g.41.5.1	78063,78064
1vqtA	213	54.30	c.1.2.3	120417
2q49A	359	54.38	c.2.1.3,d.81.1.1	139831,139832
2pmzP	48	55.17		
1jx7A	117	58.81	c.114.1.1	77195
1miwA	404	59.77	a.173.1.1,d.218.1.4	79162,79163
1m2kA	249	61.20	c.31.1.5	84754
1svjA	156	67.09	d.220.1.1	106049
2hu9A	130	68.32		
2jrpA	81	69.44		
2ppwA	216	69.76		
1a1hA	90	69.82	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1vbiA	344	69.91		
2g5gX	268	72.20		
1a7iA	81	76.07	g.39.1.3,g.39.1.3	45143,45144
2q8uA	336	76.12		
1qxfA	66	76.79	g.41.8.4	96527
1a1gA	90	78.74	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
2c5kT	95	83.95		
1v60A	123	84.13		
2b9dA	52	85.09		
1xvhA	129	86.26	a.8.1.2,a.8.1.2	116084,116085